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for using IMGT/GENE-DB

IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org

Citing IMGT/GENE-DB : Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005). PMID: 15608191

IMGT/GENE-DB program version: 3.1.19 (21 June 2018)
IMGT/GENE-DB data updates

IMGT/GENE-DB reference sequences in FASTA format:

Amino acids sequences with gaps according to the IMGT unique numbering
for F+ORF+in-frame P with IMGT Gaps alleles including orphons


The FASTA header contains 15 fields separated by '|':

1. IMGT/LIGM-DB accession number(s)
2. IMGT gene and allele name
3. species
4. IMGT allele functionality
5. exon(s), region name(s), or extracted label(s)
6. start and end positions in the IMGT/LIGM-DB accession number(s)
7. number of nucleotides in the IMGT/LIGM-DB accession number(s)
8. codon start, or 'NR' (not relevant) for non coding labels
9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB
10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB
11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors
12. number of amino acids (AA): this field indicates that the sequence is in amino acids
13. number of characters in the sequence: nt (or AA)+IMGT gaps=total
14. partial (if it is)
15. reverse complementary (if it is)

Number of results = 31
>NW_003159316|IGLV1S2*01|Oryctolagus cuniculus_Thorbecke inbred|ORF|V-REGION|1596647..1596919|273 nt|1| | | |91 AA|91+15=106| | |
QAALTQPSA.FTEAEGRTIIIPCTGSSSNV....RKGYTSWYQPLPGRPPTMLLYSS...
....SIRPSGVP.DRFTGYT..SGNTASLTIAGLQPEDEADYYCAA
>NW_003159316|IGLV1S3*01|Oryctolagus cuniculus_Thorbecke inbred|ORF|V-REGION|1640002..1640297|296 nt|1| | | |98 AA|98+15=113| | |
QAALTQPSA.FTEAEGRTIIIPCTGSSSNV....RKGYTSWYQPLPGRPPTMLLYSS...
....SIRPSGVP.DRFTGYT..SGNTASLTIAGLQPEDEADYYCAAWDSSLGA
>NW_003159316|IGLV2S1*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1776074..1776370|297 nt|1| | | |99 AA|99+14=113| | |
QPALTQPSS.AFGALGGSVTISCTGTSDDVG...YTNAVYWYRQLPGMSPTLLIYYD...
....SKRPSGIP.ERFSGSK..SGNTASLTISWLQPEDEAAYYCSSYRNPNTL
>NW_003159316|IGLV2S2*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1779194..1779490|297 nt|1| | | |99 AA|99+14=113| | |
QPALTQPSS.VSGALGGSVTITCAGSNSDIG...YNSLISWYQQLPGSVPKLLMFRV...
....DRLASGIP.ERFSGSK..SGTTASLTISGLQPEDEADYYCVSYTSSRTS
>NW_003159316|IGLV2S4*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1784385..1784681|297 nt|1| | | |99 AA|99+14=113| | |
QPALT*PPS.ASGALGSSLTIPCTGTVFDIG...YTSAVSWYQQLPGKIPKPLIYYV...
....STRPSGIP.ERFSGSK..SGITAFLTISGLQPEDEAAYFCCSWTSSGTF
>NW_003159316|IGLV3S1*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1796451..1796749|299 nt|1| | | |99 AA|99+17=116| | |
SLVLTQPAS.VQVNLGQTVSLTCTADTLS......RSYASWYQQKPGQAPVLLIYRD...
....TSRPSGVP.DRFSGSS..SGNTATLTISGAQAGDEADYYCATDDGSGSSYQ*
>NW_003159316|IGLV3S2*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1801120..1801407|288 nt|1| | | |96 AA|96+17=113| | |
SYELTQLPS.VSVSLGQTARITCGGNSIG......SKAVHWYQQKPGLAPGLLIYND...
....DERPSGVP.DRFSGSN..SGDTATLTISGAQAGDEADYYCQLWDSSAGA
>NW_003159316|IGLV3S3*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1805633..1805920|288 nt|1| | | |96 AA|96+17=113| | |
SYELTQLPS.VSVSLGQTARITCGGDSIG......SYAVSWYQQKPGLAPVLLIYRD...
....SNRPSGIP.DHFSGSN..SGNTATLTISGAQAGDEADY*CQVWDDNNEE
>NW_003159316|IGLV3S6*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1818579..1818866|288 nt|1| | | |96 AA|96+17=113| | |
SHELTKLPS.VSVSLGQTARITCGGDSIE......EYSVHWYQKRPGQAPVLLIYRD...
....SNRLSGIP.DHFSGSN..SGNTATLTISGAQAGDEADYYCQVWDDNNEE
>NW_003159316|IGLV3S7*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1823993..1824291|299 nt|1| | | |99 AA|99+17=116| | |
SFVLTQPAS.VQVNLGQTVSLTCTADTLS......RSYASWYQQKPGQAPVLLIYRD...
....TSRPSGVP.DRFSGSS..SGNTATLTISGAQAGDEADYYCATSDGSGSSYQ*
>NW_003159316|IGLV3S9*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1832748..1833035|288 nt|1| | | |96 AA|96+17=113| | |
SYELTQLPS.VSVSLGQTARITCGGDSIE......SYAVSWYQQKPGLAPVLLIYRD...
....SKWPSGIP.DRFSGSN..SGNTATLTISRAQAGDEADYYCQVFNSGFGA
>NW_003159316|IGLV4S2*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1565150..1565462|313 nt|1| | | |104 AA|104+12=116| | |
QPVLTQLPS.ASAALGASAKLTCTLSSEHS.....DYTIDW*QQHPGKAPQYLMYLESD.
..GNHEQGTGVA.DRFSGSS..SEADHDLIISNIQAEDEADYICGVVSLIDGSHS*
>NW_003159316|IGLV4S3*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1586816..1587116|301 nt|1| | | |100 AA|100+12=112| | |
QPVLTQSPS.ASAALGSSAKLTCTLSSAHK.....TYYIEWYQQQQGEAPRYLMQLKSD.
..GSYTKGTGVP.DRFSGSS..SGADRYLIISSVQAEDEADYICGVTGSNVY
>NW_003159316|IGLV4S4*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1589221..1589521|301 nt|1| | | |100 AA|100+12=112| | |
QPVLTQSPS.VSAALGASAKLTCTLSSAHK.....TYTIDWYQQQQGEAPRYLMQLKSD.
..GSYTKGTGVP.DRFSGSS..SGADRYLIIPSVQADDEADYYCGADYSGGY
>NW_003159316|IGLV4S5*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1614190..1614502|313 nt|1| | | |104 AA|104+12=116| | |
QPVPTQSPS.VSAALGSSAKLTCTLSSEHS.....DYTIDW*QQQPGKAHQYLMYLESD.
..GNHEQGTGVP.DRFSGSS..SEADHDLIISNIQAEDEADYTCGVVSLIDGSHS*
>NW_003159316|IGLV4S6*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1621502..1621814|313 nt|1| | | |104 AA|104+12=116| | |
QPVLTQSSS.ALATLGASAKLTCTLSSEHS.....GYTIDW*QQHPRKAHQYLLYLESD.
..GSFEKGTGVP.DRFSGSS..SEADRYLIISNIQAEDEGDYICGVVSLIDGSHS*
>NW_003159316|IGLV4S7*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1628404..1628716|313 nt|1| | | |104 AA|104+12=116| | |
QPVLTQSSS.ALATLGASAKLTCTLSSEHS.....DYTIDWYQQHPGKAPRYLLYLESD.
..GSYEKGTGVP.DRFSGSS..SGADHNLIISSIQAENEADYICGVVSLIDGLHS*
>NW_003159316|IGLV5S1*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1558975..1559298|324 nt|1| | | |108 AA|108+8=116| | |
QPVLTQPPS.LSASLGTTARLTCTLSTGYSV...GSLGVLWLQQVPGRPPRYLLTYHTE.
..EFKHQGSGVP.TRFSGSKDTSENSFVLSISGLQPEDEADYYCFTAHATESSFHA
>NW_003159316|IGLV5S10*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1682723..1683020|298 nt|1| | | |99 AA|99+8=107| | |
QPVLTQPPS.LSASLDTTARLTCTLSTGYSV...GEYPLVWLQQVPGRPPRYLLGYHTD.
..DIKHQGSGVP.SRFSGSKDDSANAGVLSISGLQPEDEADYYCAVG
>NW_003159316|IGLV5S2*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1561860..1562184|325 nt|1| | | |108 AA|108+8=116| | |
QPVLTQPPS.LSASLGTTARLTCTLSTGYSV...GEYPLVWLQQVPGRPPRYLLGYHTD.
..DIKHQGSGVH.SRFSGSKDTSENAGVLSISGLQPEDEADYYCATAHGNGSSAGS
>NW_003159316|IGLV5S3*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1577220..1577543|324 nt|1| | | |108 AA|108+8=116| | |
QPVLTQPPS.LSASLGTTARLTCTLSTGYSV...GKYPLVWLQQVPGRPPRYLLTYHTE.
..EFKHQGSGVH.SRFSGSKDTSENAGVLSISGLQPEDEADYYCVTAHATESSLHA
>NW_003159316|IGLV5S5*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1602309..1602633|325 nt|1| | | |108 AA|108+8=116| | |
QPVLTQPPS.LSASLDTTARLTCTLSTGYSV...GSLGVLWLQQVPGRPPRYLLAYHTD.
..DMKHQGSGVP.SRFSGSKDTSENSFVLSISGLQPEDEADYYCATACSSEGSATS
>NW_003159316|IGLV5S6*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1608386..1608709|324 nt|1| | | |108 AA|108+8=116| | |
QPVLTQPPS.LSASLGTTARLTCTLSTGYSV...GSLGVLWLQQVPGRAPRYLLSYNTD.
..EEKHQGSGVP.TRFSGSKDTSENSFVLSISGLQPEDEADYYCATAHGSESSLHA
>NW_003159316|IGLV5S7*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1610901..1611225|325 nt|1| | | |108 AA|108+8=116| | |
QPVLTQPPS.LSASLDTTARFTCTLSTGYSV...GNYGIGW*QQVPGRPPRYLLTYHTE.
..EIKHQGSGVH.SRFSGSKDDSANAGVLSISGLQPEDEADYYCATAHGNGSSAGS
>NW_003159316|IGLV5S9*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1645189..1645512|324 nt|1| | | |108 AA|108+8=116| | |
QPVLTQPPS.LSASLDTTARLTCTLSTGYSV...GSYVIGWYQQVPGRPPRYLLTYHTE.
..EIKHQGSGVH.SRFSGSKDDSANAGVLSISGLQPEDEADYYCATAHGSGSSFHA
>NW_003159316|IGLV6S1*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1535005..1535303|299 nt|1| | | |99 AA|99+13=112| | |
SVVFTQPQA.VSGSLGETVSISCTRSSGNI....GANYVYWYQQHQGHAPSQLIYQY...
....DKRPSGVP.DWFSDSKDSASNSASLTIAGLQPEDEADYYCLSGYDNYY
>NW_003159316|IGLV6S3*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1569116..1569414|299 nt|1| | | |99 AA|99+13=112| | |
QFVLTQPQS.VSGSLGQTVSISCNRDSGNI....EDYYVHWYQQHPGKAPTTVIYND...
....DQRPSGVP.DRFSGSIDSTSNSASLTITGLLAEDEADYYCLSSDSSAN
>NW_003159316|IGLV6S4*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1573770..1574068|299 nt|1| | | |99 AA|99+13=112| | |
QFVLTQPQS.VSGSPGQTVSISCKCDSGNI....EEKYVHWYQQHPGGAPTMVIYND...
....DQRPSGVP.DRFSGSIDSASNSASLTITGLLAEDESVYFCQSFDSDAN
>NW_003159316|IGLV6S5*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1617785..1618083|299 nt|1| | | |99 AA|99+13=112| | |
QFVLTQPQS.VSGSLGQTVSISCNRDSGNI....EDYYVHWYQQHPGKAPTTVIYND...
....DQRPSGVP.DRFSGSIDSTSNSASLTIAGLQAEDEADYHCQSYDSSAN
>NW_003159316|IGLV6S6*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1625121..1625419|299 nt|1| | | |99 AA|99+13=112| | |
QFVLNQPQS.VSGSLGQTVSISCNRDSGNI....EEKYVHWYQQHPGKAPTTVIYSD...
....DQRPSGVP.DRFSGSINSASNSASLTITGLLAEDEADYHCQSYDSSAN
>NW_003159316|IGLV6S7*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1632734..1633032|299 nt|1| | | |99 AA|99+13=112| | |
QFVLTQPQS.VSGSLGQTVSISCNRDSGNI....EDYYVHWYQQHPGKAPTTVIYND...
....DQRPSGVP.DRFSGSIDSTSNSASLTITGLLAEDEADYYCLSSDSSAN


Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc

IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)


-> IMGT/GENE-DB Documentation
-> IMGT/GENE-DB Query page
-> IMGT/GENE-DB direct links
-> IMGT/GENE-DB statistics
-> IMGT/GENE-DB program versions
-> IMGT/GENE-DB data updates

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text, Lefranc, M.-P. et al., Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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