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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.19 (21 June 2018)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>M21626|TRAV14/DV4*01|Homo sapiens|F|V-REGION|226..515|290 nt|1| | | |96 AA|96+12=108| | | AQKITQTQPGMFVQEKEAVTLDCTYDTSDP.....SYGLFWYKQPSSGEMIFLIYQGSY. .DQQNATE.....GRYSLNFQKARKSANLVISASQLGDSAMYFCAMRE >AE000659|TRAV14/DV4*02|Homo sapiens|F|V-REGION|179711..180000|290 nt|1| | | |96 AA|96+12=108| | | AQKITQTQPGMFVQEKEAVTLDCTYDTSDQ.....SYGLFWYKQPSSGEMIFLIYQGSY. .DEQNATE.....GRYSLNFQKARKSANLVISASQLGDSAMYFCAMRE >M21624|TRAV14/DV4*03|Homo sapiens|(F)|V-REGION|131..412|282 nt|1| | | |94 AA|94+12=106| | | AQKITQTQPGMFVQEKEAVTLDCTYDTSDP.....SYGLFWYKQPSSGEMIFLIYQGSY. .DQQNATE.....GRYSLNFQKARKSANLVISASQLGDSAMYFCAM >L09758|TRAV14/DV4*04|Homo sapiens|[F]|V-REGION|1..271|271 nt|1| | ||90 AA|90+13=103|partial in 5' and in 3' | | .QKITQTQPGMFVQEKEAVTLDCTYDTSDQ.....SYGLFWYKQPSSGEMIFLIYQGSY. .DEQNATE.....GRYSLNFQKARKSANLVISASQLGDSAMYF >AE000660|TRAV23/DV6*01|Homo sapiens|F|V-REGION|90991..91270|280 nt|1| | ||93 AA|93+14=107| | | QQQVKQSPQSLIVQKGGISIINCAYENTA......FDYFPWYQQFPGKGPALLIAIRPD. ..VSEKKE.....GRFTISFNKSAKQFSLHIMDSQPGDSATYFCAAS >M17660|TRAV23/DV6*02|Homo sapiens|(F)|V-REGION|85..364|280 nt|1| | ||93 AA|93+14=107| | | QQQVKQSPQSLIVQKGGIPIINCAYENTA......FDYFPWYQQFPGKGPALLIAIRPD. ..VSEKKE.....GRFTISFNKSAKQFSLHIMDSQPGDSATYFCAAS >M97704|TRAV23/DV6*03|Homo sapiens|(F)|V-REGION|145..424|280 nt|1| | ||93 AA|93+14=107| | | QQQVKQSPQSLIVQKGGISIINCAYENTA......FDYFPWYQQFPGKGPALLIAIRPD. ..VSEKKE.....GRFTISFNKSAKQFSLHIMDSQPGDSATYFCAAS >Y10411|TRAV23/DV6*04|Homo sapiens|[F]|V-REGION|1..267|267 nt|1| | | |89 AA|89+15=104|partial in 5' and in 3' | | .QQVKQSPQSLIVQKGGISIINCAYENTA......FDYFPWYQQFPGKGPALLIAIRPD. ..VSEKKE.....GRFTISFNKSAKQFSLHIMDSQPGDSATYFC >AE000660|TRAV29/DV5*01|Homo sapiens|F|V-REGION|167519..167798|280 nt|1| | | |93 AA|93+14=107| | | DQQVKQNSPSLSVQEGRISILNCDYTNSM......FDYFLWYKKYPAEGPTFLISISSI. ..KDKNED.....GRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAS >S81645|TRAV29/DV5*02|Homo sapiens|F|V-REGION|174..452|279 nt|1| | | |93 AA|93+14=107| | | DQQVKQNSPSLSVQEGRISILNCDYTNSM......FDYFLWYKKYPAEGPTFLISISSI. ..KDKNED.....GRFTVFLNKSAKHLSLDIVPSQPGDSAVYFCAAS >AE000660|TRAV36/DV7*01|Homo sapiens|F|V-REGION|230905..231181|277 nt|1| | | |92 AA|92+15=107| | | EDKVVQSPLSLVVHEGDTVTLNCSYEVTN......FRSLLWYKQEKKAP.TFLFMLTSS. ..GIEKKS.....GRLSSILDKKELSSILNITATQTGDSAIYLCAVE >X61070|TRAV36/DV7*02|Homo sapiens|(F)|V-REGION|7..280|274 nt|1| | | |91 AA|91+15=106| | | EDKVVQSPQSLVVHEGDTVTLNCSYEMTN......FRSLQWYKQEKKAP.TFLFMLTSS. ..GIEKKS.....GRLSSILDKKELFSILNITATQTGDSAVYLCAV >X58767|TRAV36/DV7*03|Homo sapiens|(F)|V-REGION|109..378|270 nt|1| | ||90 AA|90+15=105|partial in 3'| | EDKVVQSPLSLVVHEGDTVTPNCSYEVTN......FRSLLWYKQEKKAP.TFLFMLTSS. ..GIEKKS.....GRLSSILDKKELFSILNITATQTGDSAVYLCA >Z46643|TRAV36/DV7*04|Homo sapiens|(F)|V-REGION|87..357|271 nt|1| | | |90 AA|90+15=105| | | EDKVVQSPLSLVVHEGDTVTLNCSYEVTN......FRSLLWYKQEKKAP.TFLFMLTSS. ..GIEKKS.....GRLSSILDKKELFSILNITATQTGDSAVYLCA >AE000661|TRAV38-2/DV8*01|Homo sapiens|F|V-REGION|34309..34597|289 nt|1| | | |96 AA|96+12=108| | | AQTVTQSQPEMSVQEAETVTLSCTYDTSES.....DYYLFWYKQPPSRQMILVIRQEAY. .KQQNATE.....NRFSVNFQKAAKSFSLKISDSQLGDAAMYFCAYRS >M22198|TRDV1*01|Homo sapiens|F|V-REGION|363..649|287 nt|1| | | |95 AA|95+13=108| | | AQKVTQAQSSVSMPVRKAVTLNCLYETSWW.....SYYIFWYKQLPSKEMIFLIRQG... ....SDEQNAKS.GRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE >X15207|TRDV2*01|Homo sapiens|F|V-REGION|208..495|288 nt|1| | | |96 AA|96+12=108| | | AIELVPEHQTVPVSIGVPATLRCSMKGEAI....GNYYINWYRKTQGNTITFIYREK... ....DIYGPGFK.DNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT >Y13426|TRDV2*02|Homo sapiens|F|V-REGION|1..283|283 nt|1| | ||94 AA|94+13=107|partial in 5' and in 3' | | .IELVPEHQTVPVSIGIPATLRCSMKGEAI....GNYYINWYRKTQGNTITFIYREK... ....DIYGPGFK.DNFQGDIDIAKNLAVLKILAPSERDEGSYYCACD >AE000661|TRDV2*03|Homo sapiens|F|V-REGION|176712..176999|288 nt|1| | | |96 AA|96+12=108| | | AIELVPEHQTVPVSIGVPATLRCSMKGEAI....GNYYINWYRKTQGNTMTFIYREK... ....DIYGPGFK.DNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT >M23326|TRDV3*01|Homo sapiens|F|V-REGION|303..592|290 nt|1| | | |96 AA|96+10=106| | | CDKVTQSSPDQTVASGSEVVLLCTYDTVYS.....NPDLFWYRIRPDYSFQFVFYGDN.. ...SRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAF >X15261|TRDV3*02|Homo sapiens|F|V-REGION|316..605|290 nt|1| | | |96 AA|96+10=106| | | CDKVTQSSPDQTVASGSEVVLLCTYDTVYS.....NPDLFWYWIRPDYSFQFVFYGDN.. ...SRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYCAF
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
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Patrice.Duroux@igh.cnrs.fr
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Amélie Houles
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