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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.19 (21 June 2018)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>M12949|TRGV1*01|Homo sapiens|ORF|V-REGION|174..470|297 nt|1| | | |99 AA|99+10=109| | | SSNLEGRTKSVTRLTGSSAEITCDLPGAS......TLYIHWYLHQEGKAPQCLLYYEPY. .YSRVVLESGITPGKYDT.GS.TRSNWNLRLQNLIKNDSGFYYCATWDR >X07206|TRGV10*01|Homo sapiens|ORF|V-REGION|164..474|311 nt|1| | | |103 AA|103+6=109| | | LSKVEQFQLSISTEVKKSIDIPCKISSTRF....ETDVIHWYRQKPNQALEHLIYIVST. .KSAARRSMGKTSNKVEARKNSQTLTSILTIKSVEKEDMAVYYCAAWWV >X74798|TRGV10*02|Homo sapiens|ORF|V-REGION|164..471|308 nt|1| | | |102 AA|102+6=108| | | LSKVEQFQLSISTEVKKSIDIPCKISSTRF....ETDVIHWYRQKPNQALEHLIYIVST. .KSAARRSMGKTSNKVEARKNSQTLTSILTIKSVEKEDMAVYYCAAWD >Y11227|TRGV11*01|Homo sapiens|ORF|V-REGION|155..463|309 nt|1| | | |103 AA|103+7=110| | | LGQLEQPEISISRPANKSAHISWKASIQGF....SSKIIHWYWQKPNKGLEYLLHVFLT. ..ISAQDCSGGKTKKLEVSKNAHTSTSTLKIKFLEKEDEVVYHCACWIRH >AF159056|TRGV11*02|Homo sapiens|ORF|V-REGION|81990..82298|309 nt|1| | | |103 AA|103+7=110| | | LGQLEQPEISISRPANKSAHISWKASIQGF....SSKIIHWYWQKPNKGLEYLLHVFLT. ..ISAQDCSGGKTKKLEISKNAHTSTSTLKIKFLEKEDEVVYHCACWIRH >M13429|TRGV2*01|Homo sapiens|F|V-REGION|166..465|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGRTKSVIRQTGSSAEITCDLAEGS......NGYIHWYLHQEGKAPQRLQYYDSY. .NSKVVLESGVSPGKYYTYAS.TRNNLRLILRNLIENDSGVYYCATWDG >M27337|TRGV2*02|Homo sapiens|(F)|V-REGION|44..340|297 nt|1| | | |99 AA|99+9=108| | | SSNLEGRTKSVIRQTGSSAEITCDLAEGS......NGYIHWYLHQEGKAPQRLQYYDSY. .NSKVVLESGVSPGKYYTYAS.TRNNLRLILQNLIENDSGVYYCATWD >IMGT000011|TRGV2*03|Homo sapiens|F|V-REGION|24893..25192|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGRTKSVIRQTGSSAEITCDLAEGS......NGYIHWYLHQEGKAPQRLQYYDSY. .NSKVVLESGVSPGKYYTYAS.TRNNLRLILRNLIENDFGVYYCATWDG >M13430|TRGV3*01|Homo sapiens|F|V-REGION|169..468|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGRTKSVTRQTGSSAEITCDLTVTN......TFYIHWYLHQEGKAPQRLLYYDVS. .TARDVLESGLSPGKYYTHTP.RRWSWILRLQNLIENDSGVYYCATWDR >X04038|TRGV3*02|Homo sapiens|F|V-REGION|339..637|299 nt|1| | | |99 AA|99+9=108| | | SSNLEGRTKSVTRQTGSSAEITCDLTVTN......TFYIHWYLHQEGKAPQRLLYYDVS. .TARDVLESGLSPGKYYTHTP.RRWSWILRLQNLIENDSGVYYCATWD >X15272|TRGV4*01|Homo sapiens|F|V-REGION|406..705|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGRTKSVIRQTGSSAEITCDLAEGS......TGYIHWYLHQEGKAPQRLLYYDSY. .TSSVVLESGISPGKYDTYGS.TRKNLRMILRNLIENDSGVYYCATWDG >X13354|TRGV4*02|Homo sapiens|F|V-REGION|170..469|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGRTKSVIRQTGSSAEITCDLAEGS......TGYIHWYLHQEGKAPQRLLYYDSY. .TSSVVLESGISPGKYDTYGS.TRKNLRMILRNLIENDSGVYYCATWDG >X13355|TRGV5*01|Homo sapiens|F|V-REGION|171..470|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGGTKSVTRPTRSSAEITCDLTVIN......AFYIHWYLHQEGKAPQRLLYYDVS. .NSKDVLESGLSPGKYYTHTP.RRWSWILILRNLIENDSGVYYCATWDR >M13431|TRGV5P*01|Homo sapiens|P|V-REGION|171..470|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGRMKSVTRPTGSSAEITCDLTVIN......AVYIHWYLQQEGKTPQHLLHYEVS. .NSRDVLESGLSLGKYYTHTP.RRWSWNLRLQNLIENDSGVYYCATWGR >AF159056|TRGV5P*02|Homo sapiens|P|V-REGION|28623..28922|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGRMKSVTRPTGSSAEITCDLTVIN......AVYIHWYLQQEGKTPQHLLHYDVS. .NSRDVLESGLSLGKYYTHTP.RRWSWNLRLQNLIENDSGVYYCATWGR >M13434|TRGV8*01|Homo sapiens|F|V-REGION|180..479|300 nt|1| | | |100 AA|100+9=109| | | SSNLEGRTKSVTRPTGSSAVITCDLPVEN......AVYTHWYLHQEGKAPQRLLYYDSY. .NSRVVLESGISREKYHTYAS.TGKSLKFILENLIERDSGVYYCATWDR >X07205|TRGV9*01|Homo sapiens|F|V-REGION|178..483|306 nt|1| | | |102 AA|102+7=109| | | AGHLEQPQISSTKTLSKTARLECVVSGITI....SATSVYWYRERPGEVIQFLVSISYD. ..GTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEV >X15274|TRGV9*02|Homo sapiens|F|V-REGION|827..1132|306 nt|1| | | |102 AA|102+7=109| | | AGHLEQPQISSTKTLSKTARLECVVSGIKI....SATSVYWYRERPGEVIQFLVSISYD. ..GTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEV >X07208|TRGVA*01|Homo sapiens|P|V-REGION|134..418|285 nt|1| | | |95 AA|95+14=109| | | LIRPEQLAH.VLGH*GSLVILQCVVRTRI.......SYTHWYQQKGQVPEALHQLAMS.. ...KLDVQWDSILKADKIIAK.DGSSSILAVLKLETGIEGMNYCTTWAL
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles
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