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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.19 (21 June 2018)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>J00590|IGLV1*01|Mus musculus_BALB/c|F|V-REGION|243..536|294 nt|1| | | |98 AA|98+14=112| | | QAVVTQESA.LTTSPGETVTLTCRSSTGAVT...TSNYANWVQEKPDHLFTGLIGGT... ....NNRAPGVP.ARFSGSL..IGDKAALTITGAQTEDEAIYFCALWYSNHF >X58417|IGLV1*02|Mus musculus_BALB/c|F|V-REGION|414..707|294 nt|1| | | |98 AA|98+14=112| | | QAVVTQESA.LTTSPGETVTLTCRSSTGAAT...TSNYANWVQEKPDHLFTGLIGGT... ....NNRAPGVP.ARFSGSL..IGDKAALTITGAQTEDEAIYFCALWYSNHF >J00599|IGLV2*01|Mus musculus|F|V-REGION|232..525|294 nt|1| | | |98 AA|98+14=112| | | QAVVTQESA.LTTSPGGTVILTCRSSTGAVT...TSNYANWVQEKPDHLFTGLIGGT... ....SNRAPGVP.VRFSGSL..IGDKAALTITGAQTEDDAMYFCALWYSTHF >X58412|IGLV2*02|Mus musculus_BALB/c|F|V-REGION|298..591|294 nt|1| | | |98 AA|98+14=112| | | QAVVTQESA.LTTSPGGTVILTCRSSTGAVT...TSNYANWVQEKPDHLFTGLIGGT... ....SNRAPGVP.VRFSGSL..IGDKAALTITGAQTEDDAMYFCALWYSTHF >M34597|IGLV3*01|Mus musculus_BALB/c|F|V-REGION|220..532|313 nt|1| | | |104 AA|104+12=116| | | QLVLTQSSS.ASFSLGASAKLTCTLSSQHS.....TYTIEWYQQQPLKPPKYVMELKKD. ..GSHSTGDGIP.DRFSGSS..SGADRYLSISNIQPEDEAIYICGVGDTIKEQFV* >AF357985|IGLV4*01|Mus musculus_MBK|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLSCKRSTGNI....GNNYVHWYQQYMGRSPTNMIYDD... ....NKRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357981|IGLV5*01|Mus musculus_PWK|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLSCKRSTGNI....GNNYVNWYQQYMGRSPTNMIYGD... ....DQRPTGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357979|IGLV6*01|Mus musculus_PWK|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLPCKCSTGNI....GSYYVHWYQQHMGRSPTNMIHSD... ....DQRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357983|IGLV6*02|Mus musculus_MAI|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLPCKRSTGNI....GSYYVHWYQQHMGRSPTNMIYSD... ....DQRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357987|IGLV6*03|Mus musculus_MBK|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLPCKRSTGNI....GSYYVHWYQQHMGRSPTNMIHSD... ....DQRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357980|IGLV7*01|Mus musculus_PWK|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLSCKPSTGKI....GNYFMSWYQQHMGRSPTNMIYRD... ....DLRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357984|IGLV7*02|Mus musculus_MBK|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLSCKPSTGKI....GNNYVSWYQQHMGRSPTNMIYGD... ....DLRPSGDS.DRFSGSIDSSSNSAFLTINNVQAED >AF357982|IGLV8*01|Mus musculus_MAI|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLPCKRSTGNI....GNDYVHWYQQHMGRSPTNMIYRD... ....DQRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357986|IGLV8*02|Mus musculus_MBK|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLPCERSTGNI....GNDYVHWYQQHMGRSPTNMIYRD... ....DLRPSGDS.DRFSGSIDSSSNSAFLTINNVQAED >M17529|IGLV2*01|Mus spretus_SPE|F|V-REGION|300..593|294 nt|1| | | |98 AA|98+14=112| | | QAVVTQESA.LTTSPGGTVILTCRSSTGAVT...TSNYAIWVQEKTDHLFAGVIGDT... ....SNRAPGVP.ARFSGSL..IGDKAALTITGAQTEDDAMYFCALWYSNHF >AF357988|IGLV3*01|Mus spretus_B6.lambdaSEG|F|V-REGION|186..494|309 nt|1| | | |103 AA|103+12=115| | | QPVLTQSSS.ASFSLGASAKLTCTLSSEHS.....TYIIEWYQQQPLKPPKYVMQLKKD. ..GSHSKGDGIP.DRFSGSS..SGADRYLSISNIQPEDEAIYICGVDDNIRGQFV >AF357978|IGLV4*01|Mus spretus_SMZ|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLSCKRSTGNI....GNNYVHWYQQYMGRSPTNMIYDD... ....NKRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357975|IGLV4*02|Mus spretus_STF|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLPCKRSTGNI....GNNYVHWYQQYMGRSPTNMIYDD... ....NKRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED >AF357977|IGLV8*01|Mus spretus_SMZ|[F]|V-REGION|1..245|245 nt|1| | | |81 AA|81+17=98|partial in 5'| | ....TQPSS.VSTSLGSTVKLPCKRSTGNI....GNNYVHWYQQHMGRPPTNMIYRD... ....DQRPSGVS.DRFSGSIDSSSNSAFLTINNVQAED
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles
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