THANK YOU for using IMGT/GENE-DB |
![]()
|
IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
![]() |
IMGT/GENE-DB program version: 3.1.19 (21 June 2018)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>AB513624|IGHV1-10*01|Sus scrofa|F|V-REGION|34381..34676|296 nt|1| | | |98 AA|98+8=106| | | EVKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSTYINWVRQAPGKGLEWLAAISTS. .GGSTYYADSVK.GRFTISRDDSQNTAYLQMNSLRTEDTARYYCAT >AB513624|IGHV1-11*01|Sus scrofa|F|V-REGION|27764..28065|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFDF....SSYGVGWVRQAPGKGLESLASIGSGS YIGSTYYADSVK.GRFTISSDDSQNTVYLQMNSLRTEDTARYYCAR >AB513624|IGHV1-12*01|Sus scrofa|F|V-REGION|15825..16126|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFDF....SDYAFSWVRQAPGKGLEWVAAIASSD YDGSTYYADSVK.GRFTISSDDSQNMVYLQMNSLRTEDTARYYCAI >AB513624|IGHV1-14*01|Sus scrofa|F|V-REGION|9452..9747|296 nt|1| | | |98 AA|98+8=106| | | EVKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSYEISWVRQAPGKGLEWLAAISTS. .GGSTYYADSVK.GRFTISKDDSQNTAYLQMNSLRTEDTARYYCAR >AB513624|IGHV1-15*01|Sus scrofa|F|V-REGION|3178..3473|296 nt|1| | | |98 AA|98+8=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSYSMSWVRQAPGKGLEWLAGIYSS. .GSSTYYADSVK.GRFTISSDNSQNTAYLQMNSLRTEDTARYYCAR >AB513624|IGHV1-2*01|Sus scrofa|F|V-REGION|76169..76470|302 nt|1| | | |100 AA|100+6=106| | | EVKLVECGG.GLVQPGGSLRLSCVGSGYTF....SSYGMSWVRQAPGKGLEWLAGIDSGS YSGSSYYADSVK.GRFTISRDDSQNTAYLQMNSLRTEDTARYYCAT >AB513624|IGHV1-4*01|Sus scrofa|F|V-REGION|66954..67249|296 nt|1| | | |98 AA|98+8=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSTYINWVRQAPGKGLEWLAAISTS. .GGSTYYADSVK.GRFTISRDNSQNTAYLQMNSLRTEDTARYYCAT >AF064686|IGHV1-4*02|Sus scrofa|F|V-REGION|211..506|296 nt|1| | | |98 AA|98+8=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSTYINWVRQAPGKGLEWLAAISTS. .GGSTYYADSVK.GRFTISRDNSQNTAYLQMNSLRTEDTARYYCAR >AB513624|IGHV1-5*01|Sus scrofa|F|V-REGION|60344..60645|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGITF....SSYAVSWVRQAPGKGLESLASIGSGS YIGSTDYADSVK.GRFTISSDDSQNTVYLQMNSLRTEDTARYYCAR >AB513624|IGHV1-6*01|Sus scrofa|F|V-REGION|48673..48974|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFDF....SDNAFSWVRQAPGKGLEWVAAIASSD YDGSTYYADSVK.GRFTISSDNSQNTVYLQMNSLRTEDTARYYCAI >AF064687|IGHV1-6*02|Sus scrofa|F|V-REGION|210..511|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFDF....SDNAFSWVRQAPGKGLEWVAAIASSD YDGSTYYADSVK.GRFTISRDNSQNTVYLQMNSLRTEDTARYYCAI >AB513624|IGHV1-8*01|Sus scrofa|F|V-REGION|42288..42589|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGITF....SSYAVSWVRQAPGKGLEWLAGIDSGS YSGSTYYADSVK.GRFTISRDDSQNTAYLQMTSLRTEDTARYYCAG >AF064688|IGHV1S2*01|Sus scrofa|F|V-REGION|211..506|296 nt|1| | | |98 AA|98+8=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSYEISWVRQAPGKGLEWLAGIYSS. .GGSTYYADSVK.GRFTISRDNSQNTAYLQMNSLRTEDTARYYCAR >AF064689|IGHV1S5*01|Sus scrofa|F|V-REGION|210..511|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSYAVSWVRQAPGKGLEWLAGIDSGS YSGSTYYADSVK.GRFTISRDNSQNTAYLQMNSLRTEDTARYYCAR >AF064690|IGHV1S6*01|Sus scrofa|F|V-REGION|210..511|302 nt|1| | | |100 AA|100+6=106| | | QEKLVESGG.GLVQPGGSLRLSCVGSGFDF....SSYGVGWVRQAPGKGLESLASIGSGS YIGSTDDADSVK.GRFTISSDNSQNTAYLQMNSLRTEDTARYYCAR >AF064692|IGHV1S7*01|Sus scrofa|P|V-REGION|211..512|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSSPIGWVRQAPGKGLEWLASIGSGS YSGSTYYADSVN.GRFTISRDNSQNTAYLQMNSLRTEDTARYYCAR >DQ886392|IGHV1S8*01|Sus scrofa|P|V-REGION|180..481|302 nt|1| | | |100 AA|100+6=106| | | EEKLVESGG.GLVQPGGSLRLSCVGSGFTF....SSYPIGWVRQAPGKGLEWLASIGRGR YRGSTYYADYVK.GRFTISRDNSQNTAYLQMNSLRTEDTARYYCAR
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles
Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy
© Copyright 1995-2018 IMGT®, the international ImMunoGeneTics information system®