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Citing IMGT/GENE-DB : Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005). PMID: 15608191

IMGT/GENE-DB program version: 3.1.19 (21 June 2018)
IMGT/GENE-DB data updates

IMGT/GENE-DB reference sequences in FASTA format:

Amino acids sequences for F+ORF+in-frame P alleles including orphons


The FASTA header contains 15 fields separated by '|':

1. IMGT/LIGM-DB accession number(s)
2. IMGT gene and allele name
3. species
4. IMGT allele functionality
5. exon(s), region name(s), or extracted label(s)
6. start and end positions in the IMGT/LIGM-DB accession number(s)
7. number of nucleotides in the IMGT/LIGM-DB accession number(s)
8. codon start, or 'NR' (not relevant) for non coding labels
9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB
10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB
11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors
12. number of amino acids (AA): this field indicates that the sequence is in amino acids
13. number of characters in the sequence: nt (or AA)+IMGT gaps=total
14. partial (if it is)
15. reverse complementary (if it is)

Number of results = 6
>AB513625|IGHJ1*01|Sus scrofa|F|J-REGION|43600..43653|54 nt|3| | | |17 AA|17+0=17| | |
HGYLDSWGQGILVTVSS
>AB513625|IGHJ2*01|Sus scrofa|F|J-REGION|43773..43825|53 nt|2| | | |17 AA|17+0=17| | |
PWKLDHWGRGVLVTVSS
>AB513625|IGHJ3*01|Sus scrofa|F|J-REGION|44083..44130|48 nt|3| | | |15 AA|15+0=15| | |
HLHSWGRGVEVTVSS
>AB513625|IGHJ4*01|Sus scrofa|F|J-REGION|44475..44525|51 nt|3| | | |16 AA|16+0=16| | |
NGLESWGQGTLVYDAS
>AB513625|IGHJ5*01|Sus scrofa|F|J-REGION|45019..45072|54 nt|3| | | |17 AA|17+0=17| | |
YYAMDLWGPGVEVVVSS
>AJ554305|IGHJ5*02|Sus scrofa|ORF|J-REGION|38..80|43 nt|2| | | |14 AA|14+0=14| | |
LLCWGPGVEVVVSS


Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc

IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)


-> IMGT/GENE-DB Documentation
-> IMGT/GENE-DB Query page
-> IMGT/GENE-DB direct links
-> IMGT/GENE-DB statistics
-> IMGT/GENE-DB program versions
-> IMGT/GENE-DB data updates

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text, Lefranc, M.-P. et al., Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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