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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.19 (21 June 2018)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>AC003996|TRAV13-4/DV7*01|Mus musculus_129/SvJ|F|V-REGION|4043..4313|271 nt|1| | | |90 AA|90+19=109| | | GQQVQQSP.ASLVLQEGENAELQCNFSSTA.......TQLQWFYQRPGGSLVSLLYNPS. ....GTKHT.....GRLTSTTVTKE.RRSSLHISSSQITDSGTYFCAME >M26299|TRAV13-4/DV7*02|Mus musculus_C57BL/6|(F)|V-REGION|115..383|269 nt|1| | | |89 AA|89+19=108| | | GQQVQQSP.ASLVLQEGENAELQCNFSSTA.......TRLQWFYQRPGGSLVSLLSNPS. ....GTKHT.....GRLTSTTVTKE.RRGSLHISSSQITDSGTYLCAI >U07879|TRAV13-4/DV7*03|Mus musculus_SWRxNZB(F1)|(F)|V-REGION|109..378|270 nt|1| | | |90 AA|90+19=109| | | GQQVEQSP.ASLVLQEGEKAELQCNFSSTA.......TELQWFYQSPGGRLVSLLYNPS. ....GTKQS.....GRLISTTVIKE.RRSSLHISSSQITDSGTYLCAMD >L77152|TRAV14D-3/DV8*01|Mus musculus_B10.A|F|V-REGION|279..558|280 nt|1| | | |93 AA|93+16=109| | | QQQVRQSS.QSLTVWEGETAILNCSYENSA......FDYFPWYQQFPGEGPALLIAIRSV ...SDKKED.....GRFTIFFNKRE.KNLSLHIKDSQPGDSATYFCAAS >L77151|TRAV14D-3/DV8*02|Mus musculus_B10.A|F|V-REGION|279..558|280 nt|1| | | |93 AA|93+16=109| | | QQQVRQSP.QSLTVWEGETAILNCSYENSA......FDYFPWYQQFPGEGPALLIAIRSV ...SDKKED.....GRFTIFFNKRE.KKLSLHITDSQPGDSATYFCAAS >U04624|TRAV14D-3/DV8*03|Mus musculus_BALB/c|F|V-REGION|462..741|280 nt|1| | | |93 AA|93+16=109| | | QQQVRQSP.QSLTVWEGETAILNCSYENSA......FDYFPWYQQFPGEGPALLIAIRSV ...SDKKED.....GGFTIFFNKRE.KNLSLHIKDSQPGDSATYFCAAS >U07557|TRAV14D-3/DV8*04|Mus musculus_C57BL/10|(F)|V-REGION|1..252|252 nt|1| | | |84 AA|84+25=109|partial in 5'| | ..........SLTVWEGETAILNCSYENSA......FDYFPWYQQFPGEGPALLIAIRSV ...SDKKED.....GRFTIFFNKRE.KKLSLHITDSQPGDSATYFCAAS >U07872|TRAV14D-3/DV8*05|Mus musculus_SWRxNZB(F1)|(F)|V-REGION|105..381|277 nt|1| | | |92 AA|92+16=108| | | QQQVRQSP.QSLTVWEGETAILNCSYENSA......FDYFLWYQQFPGEGPALLIFIRSV ...SDKKED.....GRFTIFFNKRE.QKLSLHITDSQPGDSATYFCAA >U07875|TRAV14D-3/DV8*06|Mus musculus_SWRxNZB(F1)|(F)|V-REGION|93..371|279 nt|1| | | |93 AA|93+16=109| | | QQQVRQSP.QSLTVWEGETAILNCSYENSA......FDYFLWYQQFPGEGPALLIAIRSV ...SDKKED.....GRFTIFFNKRE.QKLSLHITDSQPGDSATYFCAAS >AF126457|TRAV14D-3/DV8*07|Mus musculus_C57BL/6xDBA/2(F1)|(F)|V-REGION|1..280|280 nt|1| | | |93 AA|93+16=109| | | QQQVRQSP.QSLTVSEGETTILNCSYENSA......FDYFPWYQQFPGEGPALLIAIRSV ...SDKKED.....GRFTIFFNKRE.KKLSLHITDSQPGDSATYFCAAS >AC163653|TRAV14D-3/DV8*08|Mus musculus_C57BL/6J|F|V-REGION|131271..131550|280 nt|1| | | |93 AA|93+16=109| | | QQQVRQSP.QSLTVWEGETAILNCSYENSA......FDYFPWYQQFPGEGPALLISILSV ...SDKKED.....GRFTIFFNKRE.KKLSLHIADSQPGDSATYFCAAS >AC004406|TRAV15-1/DV6-1*01|Mus musculus_129/SvJ|F|V-REGION|38713..39004|292 nt|1| | | |97 AA|97+14=111| | | AQKVIQVW.STTSRQEGEKLTLDCSYKTSQV.....LYHLFWYKHLLSGEMVLLIRQMPS ..TIAIERS.....GRYSVVFQKSR.KSISLVISTLQPDDSGKYFCALWEL >X63939|TRAV15-1/DV6-1*02|Mus musculus_BALB/c|(F)|V-REGION|16..307|292 nt|1| | ||97 AA|97+14=111| | | AQKVIQVW.STTSRQEGEKLTLDCSYKTSQV.....LYHLFWYKHLLSGEMVLLIRQMPS ..TIAIERS.....GRYSVVFQKSR.KSISLVISTLQPDDSGKYFCALWEL >AC003997|TRAV15-2/DV6-2*01|Mus musculus_129/SvJ|F|V-REGION|91419..91707|289 nt|1| | | |96 AA|96+15=111| | | AQKVTQVQ.STGSSQWG.EVTLHCSYETSEY.....FYVILWYKQLFSGEMVFLIYQTSF ..DTQNQRN.....SRYSVVFQKSL.KSISLVISASQPEDSGTYFCALSEL >AF085010|TRAV15-2/DV6-2*02|Mus musculus_C57BL/6|(F)|V-REGION|1..284|284 nt|1| | | |94 AA|94+16=110|partial in 5'| | .QRVTQVQ.STGSSQWG.EVTLDCSYETSEY.....SYLILWYRQLFSGEMVFLIYQPSF ..DTQNQRS.....GHYSVVFQKSF.KSISLVISASQPEDSGTYFCALSE >X07878|TRAV15D-1/DV6D-1*01|Mus musculus_BALB/c|F|V-REGION|298..588|291 nt|1| | | |97 AA|97+14=111| | | AQKVIQVW.STPSRQEGEELTLDCSYETSQV.....LYHLFWYKHLLSGEMVFLIRQMSS ..STAKERS.....GRYSVVFQKSL.KSISLVISALQPDDSGKYFCALWEL >AC005402|TRAV15D-1/DV6D-1*02|Mus musculus_129/SvJ|F|V-REGION|21073..21364|292 nt|1| | | |97 AA|97+14=111| | | AQKVIQVW.STASRQEGEELTLDCSYETSQV.....LYHLFWYKHLLSGEMVFLIRQMSS ..STAKERS.....GRYSVVFQKSL.KSISLVISALQPDDSGKYFCALWEL >X17225|TRAV15D-1/DV6D-1*03|Mus musculus_C57BL/6|(F)|V-REGION|25..312|288 nt|1| | | |96 AA|96+14=110| | | AEKVIQVW.STTSRQEGEKLTLDCSYKTSQV.....LYHLFWYKHLLSGEMVLLIRQMPS ..TIAIERD.....GRYSVVFQKSR.KSISLVISTLQPDDSGKYFCALWE >U66666|TRAV15D-1/DV6D-1*04|Mus musculus_DBA/2|(F)|V-REGION|1..287|287 nt|1| | | |95 AA|95+15=110|partial in 5'| | .EKVIQVW.STASRQEGEELTLDCSYETSQV.....LYHLFWYKHLLSGEMVFLIRQTSS ..STAKERS.....GRYSVVFQKSL.KSISLVISALQPDDSGKYFCALWE >U66667|TRAV15D-1/DV6D-1*05|Mus musculus_DBA/2|(F)|V-REGION|1..287|287 nt|1| | | |95 AA|95+15=110|partial in 5'| | .QKVIRIW.STASRQEGEELTLDCSYETRQV.....LYHLFWYKHLHSGEMVFLIRQTSS ..STAKERS.....GRYSVVFQKSL.KSISLVISALQPDDSGKYFCALWE >U66668|TRAV15D-1/DV6D-1*06|Mus musculus_DBA/2|(F)|V-REGION|1..287|287 nt|1| | | |95 AA|95+15=110|partial in 5'| | .QKVIQVW.STASRQEGEELTLDCSYETSQV.....LYHLFWYKHLLSGEMVFLIRQTSS ..STAKERS.....GRYSVVFQKSL.KSISLVISALQPDDSGKYFCALWE >AC005402|TRAV15D-2/DV6D-2*01|Mus musculus_129/SvJ|F|V-REGION|115084..115375|292 nt|1| | | |97 AA|97+14=111| | | AQRVTQVQ.PTGSSQWGEEVTLDCSYETSEY.....FYCIIWYRQLFSGEMVFLIYQTSF ..DTQNQRN.....GRYSVVFQKSL.KSISLVISASQPEDSGTYFCALSEL >AJ271435|TRAV15D-2/DV6D-2*02|Mus musculus_B10.A|(F)|V-REGION|13..301|289 nt|1| | | |96 AA|96+14=110| | | AQRVTQVQ.PTASSQWGEEVTLDCSYETSEY.....FYRIFWYRQLFSGEMVFLIYQPSF ..DTQNQRS.....GRYSVVFQKSF.KSISLVISASQPEDSGTYFCALSE >AC163653|TRAV15D-2/DV6D-2*03|Mus musculus_C57BL/6J|F|V-REGION|9614..9905|292 nt|1| | | |97 AA|97+14=111| | | AQRVTQVQ.PTGSSQWGEEVTLDCSYETSEY.....FYRIFWYRQLFSGEMVFLIYQPSF ..DTQNQRS.....GRYSVVFQKSF.KSISLVISASQPEDSGTYFCALSEL >AF085006|TRAV15D-2/DV6D-2*04|Mus musculus_DBA/2|(F)|V-REGION|1..287|287 nt|1| | | |95 AA|95+15=110|partial in 5'| | .QRVTQVQ.STGSSQWGEEVTLDCSYETSEY.....FYRIIWYRQLFSGEMVFLIYQTSF ..DTQNQRS.....GRYSVVFQKSL.KSISLVISASQPEDSGTYFCALSE >AF085008|TRAV15D-2/DV6D-2*05|Mus musculus_DBA/2|(F)|V-REGION|1..287|287 nt|1| | | |95 AA|95+15=110|partial in 5'| | .QRVTQVQ.STGSSQWGEEVTLDCSYETSEY.....SYLILWYRQLFSGEMVFLIYQPSF ..DTQNQRS.....GRYSVVFQKSF.KSISLVISASQPEDSGTYFCALSE >AC005855|TRAV16D/DV11*01|Mus musculus_129/SvJ|F|V-REGION|69913..70202|290 nt|1| | | |96 AA|96+14=110| | | AQKVTQTQ.TSISVMEKTTVTMDCVYETQDS.....SYFLFWYKQTASGEIVFLIRQDSY ..KKENATV.....GHYSLNFQKPK.SSIGLIITATQIEDSAVYFCAMRE >AC163653|TRAV16D/DV11*02|Mus musculus_C57BL/6|F|V-REGION|100037..100326|290 nt|1| | | |96 AA|96+14=110| | | AQKVTQTQ.TSISVMEKTTVTMDCVYETQDS.....SYFLFWYKQTASGEIVFLIRQDSY ..KKENATV.....GHYSLNFQKPK.SSIGLIITATQIEDSAVYFCAMRE >M16119|TRAV16D/DV11*03|Mus musculus_C57BL/6|(F)|V-REGION|152..439|288 nt|1| | | |96 AA|96+14=110| | | AQKVTQTQ.TSISVMEKTTVTMDCVYETRDS.....SYFLFWYKQTASGEIVFLIRQDSY ..KKENATE.....GHYSLNFQKPK.SSIGLIITATQIEDSAVYFCAMRE >M94080|TRAV21/DV12*01|Mus musculus_BALB/c|F|V-REGION|26868..27144|277 nt|1| | | |92 AA|92+18=110| | | DAKTTQ.P.DSMESTEGETVHLPCSHATISG.....NEYIYWYRQVPLQGPEYVTHGLQ. ....QNTTN.....SMAFLAIASDR.KSSTLILTHVSLRDAAVYHCILRV >X02934|TRAV21/DV12*02|Mus musculus_C57BL/Ka|(F)|V-REGION|52..325|277 nt|1| | | |92 AA|92+18=110| | | DAKTTQ.P.DSMESTEGETVHLPCSHATISG.....NEYIYWYRQVPLQGPEYVTHGLQ. ....QNTTN.....SMAFLAIASDR.KSSTSILPHVSLRDAAVYHCILRV >AC004102|TRAV4-4/DV10*01|Mus musculus_129/SvJ|F|V-REGION|3158..3431|274 nt|1| | | |91 AA|91+18=109| | | GDQVEQSP.SALSLHEGTDSALRCNFTTTM.......RSVQWFRQNSRGSLISLFYLAS. ....GTKEN.....GRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAE >AC003995|TRAV6-7/DV9*01|Mus musculus_129/SvJ|F|V-REGION|14785..15065|281 nt|1| | | |93 AA|93+16=109| | | GDSVTQTE.GQVALSEEDFLTIHCNYSASG......YPALFWYVQYPGEGPQFLFRASRD ...KEKGSS.....RGFEATYNKET.TSFHLQKASVQESDSAVYYCALG >X02932|TRAV6-7/DV9*02|Mus musculus_C57BL/Ka|(F)|V-REGION|37..314|278 nt|1| | | |92 AA|92+16=108| | | GDSVTQTE.GQVALSEEDFLTIHCNYSASG......YPALFWYVQYPGEGPQFLFRASRD ...KEKGSS.....RGFEATYDKGT.TSFHLRKASVQESDSAVYYCAL >M21863|TRAV6-7/DV9*03|Mus musculus_B10.PL|(F)|V-REGION|37..315|279 nt|1| | | |93 AA|93+16=109| | | GDSVTQTE.GQVALSEEDFLTIHCNYSASG......YPALFWYVQYPGEGPQFLFRASRD ...KEKGSS.....RGFEATYDKGT.TSFHLRKASVQESDSAVYYCALG >X13316|TRAV6-7/DV9*04|Mus musculus_C57BL/6|(F)|V-REGION|1..252|252 nt|1| | | |84 AA|84+25=109|partial in 5'| | ..........QVALSEEDFLTIHCNYSASG......YPTLFWYVQYPGEGPQLLFRASRD ...KEKGSS.....RGFEATYDKGT.TSFHLRKASVQESDSAVYYCALS >U21453|TRAV6-7/DV9*06|Mus musculus_BALB/c|(F)|V-REGION|1..249|249 nt|1| | | |83 AA|83+26=109|partial in 5'| | ...........VALTEEDFLTIHCNYSASG......YPALFWYVQYPGEGPQFLFRASRD ...KEKGSS.....RGFEATYNKET.TSFHLQKASVQESYSAVYYCALG >U21409|TRAV6-7/DV9*07|Mus musculus_BALB/c|(F)|V-REGION|1..246|246 nt|1| | | |82 AA|82+27=109|partial in 5'| | ............ALTEEDFLTIHCNYSASG......YPALFWYVQYPGEGPQFLFRASRD ...KEKGSS.....RGFEATYNKET.TSFHLQKASVQESDSAVYYCALG >D12899|TRAV6-7/DV9*08|Mus musculus_BALB/cxC57BL/6(F1)|(F)|V-REGION|1..172|172 nt|1| | | |56 AA|56+53=109|partial in 5'| | ............................................GRPGEGPQFLFRASRD ...KEKGSS.....RGFEATYNKET.TSFHLQKASVQESDSAGYYCALG >M94080|TRDV1*01|Mus musculus_129/SvJ|F|V-REGION|32336..32612|277 nt|1| | | |92 AA|92+15=107| | | TQMLHQSPQSLTIQEGDEVTMSCNLSTSL.......YALLWYRQGDDGSLVSLVTLQ... ....KGGDEKSK.DKITAKLDKKMQQSSLQIQASQPSHSGTYLCGGK >AC003993|TRDV2-1*01|Mus musculus_129/SvJ|F|V-REGION|2898..3185|288 nt|1| | | |96 AA|96+13=109| | | AQTVSQHQQEKSVQVAESATLDCTYDTSDT.....NYLLFWYKQQGGQVTLVIRQEA... ....YKQYNAME.NRFSVNFQKAAKSFSLEISDSQLGDAATYFCALRGS >AC003993|TRDV2-2*01|Mus musculus_129/SvJ|F|V-REGION|13742..14029|288 nt|1| | | |96 AA|96+13=109| | | AQTVSQPQKKKSVQVAESATLDCTYDTSDT.....NYLLFWYKQQGGQVTLVILQEA... ....YKQYNATL.NRFSVNFQKAAKSFSLEISDSQLGDAATYFCALMER >U28810|TRDV2-2*02|Mus musculus_B10.A|[F]|V-REGION|301..585|285 nt|1| | | |95 AA|95+13=108| | | AQTVSQPQKKKSVQVAESATLDCTYDTSDT.....NYLLFWYKQQGGQVTLVILQEA... ....YKQYNATL.NRFSVNFQKAAKSFSLEISDSQLGDAATYFCALRG >AC003057|TRDV4*01|Mus musculus_129/SvJ|F|V-REGION|26169..26456|288 nt|1| | | |96 AA|96+12=108| | | DVYLEPVAKTFTVVAGDPASFYCTVTGGDM....KNYHMSWYKKNGTNALFLVYKLN... ....SNSTDGGK.SNLKGKINISKNQFILDIQKATMKDAGTYYCGSDI >M23382|TRDV5*01|Mus musculus_BALB/c|F|V-REGION|263..556|294 nt|1| | | |98 AA|98+10=108| | | CITLTQSSTDQTVASGTEVTLLCTYNADSP.....NPDLFWYRKRPDRSFQFILYRDD.. ...TSSHDADFVQGRFSVKHSKANRTFHLVISPVSLEDSATYYCASGY >M23095|TRDV5*02|Mus musculus_B10.D2-H2dm1|F|V-REGION|469..762|294 nt|1| | | |98 AA|98+10=108| | | CITLTQSSTDQTVASGTEVTLLCTYNADSP.....NPDLFWYRKRPDRSFQFILYRDD.. ...TSSHDADFVQGRFSVKHSKANRTFHLVISPVSLEDSATYYCASGY >M64239|TRDV5*03|Mus musculus_B10.D2-H2dm1|F|V-REGION|14323..14616|294 nt|1| | | |98 AA|98+10=108| | | CITLTQSSTDQTVASGTEVTLLCTYNADSP.....NPDLFWYRKRPDRSFQFILYRDD.. ...TSSHDADFVQGRFSVKHSKANRTFHLVISPVSLEDSATYYCASGY >M37281|TRDV5*04|Mus musculus_BALB/cx129(F1)|(F)|V-REGION|99..392|294 nt|1| | | |98 AA|98+10=108| | | CITLTQSSTDQTVASGTEATLLCTYNADSP.....NPDLFWYRKRPDRSFQFILYRDD.. ...TSSHDADFVQGRFSVKHSKANRTFHLVISPVSLEDSATYYCASGY
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
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Patrice.Duroux@igh.cnrs.fr
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