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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.19 (21 June 2018)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>NW_003159316|IGLV1S2*01|Oryctolagus cuniculus_Thorbecke inbred|ORF|V-REGION|1596647..1596919|273 nt|1| | | |91 AA|91+15=106| | | QAALTQPSA.FTEAEGRTIIIPCTGSSSNV....RKGYTSWYQPLPGRPPTMLLYSS... ....SIRPSGVP.DRFTGYT..SGNTASLTIAGLQPEDEADYYCAA >NW_003159316|IGLV1S3*01|Oryctolagus cuniculus_Thorbecke inbred|ORF|V-REGION|1640002..1640297|296 nt|1| | | |98 AA|98+15=113| | | QAALTQPSA.FTEAEGRTIIIPCTGSSSNV....RKGYTSWYQPLPGRPPTMLLYSS... ....SIRPSGVP.DRFTGYT..SGNTASLTIAGLQPEDEADYYCAAWDSSLGA >NW_003159316|IGLV2S1*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1776074..1776370|297 nt|1| | | |99 AA|99+14=113| | | QPALTQPSS.AFGALGGSVTISCTGTSDDVG...YTNAVYWYRQLPGMSPTLLIYYD... ....SKRPSGIP.ERFSGSK..SGNTASLTISWLQPEDEAAYYCSSYRNPNTL >NW_003159316|IGLV2S2*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1779194..1779490|297 nt|1| | | |99 AA|99+14=113| | | QPALTQPSS.VSGALGGSVTITCAGSNSDIG...YNSLISWYQQLPGSVPKLLMFRV... ....DRLASGIP.ERFSGSK..SGTTASLTISGLQPEDEADYYCVSYTSSRTS >NW_003159316|IGLV2S4*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1784385..1784681|297 nt|1| | | |99 AA|99+14=113| | | QPALT*PPS.ASGALGSSLTIPCTGTVFDIG...YTSAVSWYQQLPGKIPKPLIYYV... ....STRPSGIP.ERFSGSK..SGITAFLTISGLQPEDEAAYFCCSWTSSGTF >NW_003159316|IGLV3S1*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1796451..1796749|299 nt|1| | | |99 AA|99+17=116| | | SLVLTQPAS.VQVNLGQTVSLTCTADTLS......RSYASWYQQKPGQAPVLLIYRD... ....TSRPSGVP.DRFSGSS..SGNTATLTISGAQAGDEADYYCATDDGSGSSYQ* >NW_003159316|IGLV3S2*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1801120..1801407|288 nt|1| | | |96 AA|96+17=113| | | SYELTQLPS.VSVSLGQTARITCGGNSIG......SKAVHWYQQKPGLAPGLLIYND... ....DERPSGVP.DRFSGSN..SGDTATLTISGAQAGDEADYYCQLWDSSAGA >NW_003159316|IGLV3S3*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1805633..1805920|288 nt|1| | | |96 AA|96+17=113| | | SYELTQLPS.VSVSLGQTARITCGGDSIG......SYAVSWYQQKPGLAPVLLIYRD... ....SNRPSGIP.DHFSGSN..SGNTATLTISGAQAGDEADY*CQVWDDNNEE >NW_003159316|IGLV3S6*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1818579..1818866|288 nt|1| | | |96 AA|96+17=113| | | SHELTKLPS.VSVSLGQTARITCGGDSIE......EYSVHWYQKRPGQAPVLLIYRD... ....SNRLSGIP.DHFSGSN..SGNTATLTISGAQAGDEADYYCQVWDDNNEE >NW_003159316|IGLV3S7*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1823993..1824291|299 nt|1| | | |99 AA|99+17=116| | | SFVLTQPAS.VQVNLGQTVSLTCTADTLS......RSYASWYQQKPGQAPVLLIYRD... ....TSRPSGVP.DRFSGSS..SGNTATLTISGAQAGDEADYYCATSDGSGSSYQ* >NW_003159316|IGLV3S9*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1832748..1833035|288 nt|1| | | |96 AA|96+17=113| | | SYELTQLPS.VSVSLGQTARITCGGDSIE......SYAVSWYQQKPGLAPVLLIYRD... ....SKWPSGIP.DRFSGSN..SGNTATLTISRAQAGDEADYYCQVFNSGFGA >NW_003159316|IGLV4S2*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1565150..1565462|313 nt|1| | | |104 AA|104+12=116| | | QPVLTQLPS.ASAALGASAKLTCTLSSEHS.....DYTIDW*QQHPGKAPQYLMYLESD. ..GNHEQGTGVA.DRFSGSS..SEADHDLIISNIQAEDEADYICGVVSLIDGSHS* >NW_003159316|IGLV4S3*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1586816..1587116|301 nt|1| | | |100 AA|100+12=112| | | QPVLTQSPS.ASAALGSSAKLTCTLSSAHK.....TYYIEWYQQQQGEAPRYLMQLKSD. ..GSYTKGTGVP.DRFSGSS..SGADRYLIISSVQAEDEADYICGVTGSNVY >NW_003159316|IGLV4S4*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1589221..1589521|301 nt|1| | | |100 AA|100+12=112| | | QPVLTQSPS.VSAALGASAKLTCTLSSAHK.....TYTIDWYQQQQGEAPRYLMQLKSD. ..GSYTKGTGVP.DRFSGSS..SGADRYLIIPSVQADDEADYYCGADYSGGY >NW_003159316|IGLV4S5*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1614190..1614502|313 nt|1| | | |104 AA|104+12=116| | | QPVPTQSPS.VSAALGSSAKLTCTLSSEHS.....DYTIDW*QQQPGKAHQYLMYLESD. ..GNHEQGTGVP.DRFSGSS..SEADHDLIISNIQAEDEADYTCGVVSLIDGSHS* >NW_003159316|IGLV4S6*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1621502..1621814|313 nt|1| | | |104 AA|104+12=116| | | QPVLTQSSS.ALATLGASAKLTCTLSSEHS.....GYTIDW*QQHPRKAHQYLLYLESD. ..GSFEKGTGVP.DRFSGSS..SEADRYLIISNIQAEDEGDYICGVVSLIDGSHS* >NW_003159316|IGLV4S7*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1628404..1628716|313 nt|1| | | |104 AA|104+12=116| | | QPVLTQSSS.ALATLGASAKLTCTLSSEHS.....DYTIDWYQQHPGKAPRYLLYLESD. ..GSYEKGTGVP.DRFSGSS..SGADHNLIISSIQAENEADYICGVVSLIDGLHS* >NW_003159316|IGLV5S1*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1558975..1559298|324 nt|1| | | |108 AA|108+8=116| | | QPVLTQPPS.LSASLGTTARLTCTLSTGYSV...GSLGVLWLQQVPGRPPRYLLTYHTE. ..EFKHQGSGVP.TRFSGSKDTSENSFVLSISGLQPEDEADYYCFTAHATESSFHA >NW_003159316|IGLV5S10*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1682723..1683020|298 nt|1| | | |99 AA|99+8=107| | | QPVLTQPPS.LSASLDTTARLTCTLSTGYSV...GEYPLVWLQQVPGRPPRYLLGYHTD. ..DIKHQGSGVP.SRFSGSKDDSANAGVLSISGLQPEDEADYYCAVG >NW_003159316|IGLV5S2*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1561860..1562184|325 nt|1| | | |108 AA|108+8=116| | | QPVLTQPPS.LSASLGTTARLTCTLSTGYSV...GEYPLVWLQQVPGRPPRYLLGYHTD. ..DIKHQGSGVH.SRFSGSKDTSENAGVLSISGLQPEDEADYYCATAHGNGSSAGS >NW_003159316|IGLV5S3*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1577220..1577543|324 nt|1| | | |108 AA|108+8=116| | | QPVLTQPPS.LSASLGTTARLTCTLSTGYSV...GKYPLVWLQQVPGRPPRYLLTYHTE. ..EFKHQGSGVH.SRFSGSKDTSENAGVLSISGLQPEDEADYYCVTAHATESSLHA >NW_003159316|IGLV5S5*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1602309..1602633|325 nt|1| | | |108 AA|108+8=116| | | QPVLTQPPS.LSASLDTTARLTCTLSTGYSV...GSLGVLWLQQVPGRPPRYLLAYHTD. ..DMKHQGSGVP.SRFSGSKDTSENSFVLSISGLQPEDEADYYCATACSSEGSATS >NW_003159316|IGLV5S6*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1608386..1608709|324 nt|1| | | |108 AA|108+8=116| | | QPVLTQPPS.LSASLGTTARLTCTLSTGYSV...GSLGVLWLQQVPGRAPRYLLSYNTD. ..EEKHQGSGVP.TRFSGSKDTSENSFVLSISGLQPEDEADYYCATAHGSESSLHA >NW_003159316|IGLV5S7*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1610901..1611225|325 nt|1| | | |108 AA|108+8=116| | | QPVLTQPPS.LSASLDTTARFTCTLSTGYSV...GNYGIGW*QQVPGRPPRYLLTYHTE. ..EIKHQGSGVH.SRFSGSKDDSANAGVLSISGLQPEDEADYYCATAHGNGSSAGS >NW_003159316|IGLV5S9*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1645189..1645512|324 nt|1| | | |108 AA|108+8=116| | | QPVLTQPPS.LSASLDTTARLTCTLSTGYSV...GSYVIGWYQQVPGRPPRYLLTYHTE. ..EIKHQGSGVH.SRFSGSKDDSANAGVLSISGLQPEDEADYYCATAHGSGSSFHA >NW_003159316|IGLV6S1*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1535005..1535303|299 nt|1| | | |99 AA|99+13=112| | | SVVFTQPQA.VSGSLGETVSISCTRSSGNI....GANYVYWYQQHQGHAPSQLIYQY... ....DKRPSGVP.DWFSDSKDSASNSASLTIAGLQPEDEADYYCLSGYDNYY >NW_003159316|IGLV6S3*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1569116..1569414|299 nt|1| | | |99 AA|99+13=112| | | QFVLTQPQS.VSGSLGQTVSISCNRDSGNI....EDYYVHWYQQHPGKAPTTVIYND... ....DQRPSGVP.DRFSGSIDSTSNSASLTITGLLAEDEADYYCLSSDSSAN >NW_003159316|IGLV6S4*01|Oryctolagus cuniculus_Thorbecke inbred|P|V-REGION|1573770..1574068|299 nt|1| | | |99 AA|99+13=112| | | QFVLTQPQS.VSGSPGQTVSISCKCDSGNI....EEKYVHWYQQHPGGAPTMVIYND... ....DQRPSGVP.DRFSGSIDSASNSASLTITGLLAEDESVYFCQSFDSDAN >NW_003159316|IGLV6S5*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1617785..1618083|299 nt|1| | | |99 AA|99+13=112| | | QFVLTQPQS.VSGSLGQTVSISCNRDSGNI....EDYYVHWYQQHPGKAPTTVIYND... ....DQRPSGVP.DRFSGSIDSTSNSASLTIAGLQAEDEADYHCQSYDSSAN >NW_003159316|IGLV6S6*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1625121..1625419|299 nt|1| | | |99 AA|99+13=112| | | QFVLNQPQS.VSGSLGQTVSISCNRDSGNI....EEKYVHWYQQHPGKAPTTVIYSD... ....DQRPSGVP.DRFSGSINSASNSASLTITGLLAEDEADYHCQSYDSSAN >NW_003159316|IGLV6S7*01|Oryctolagus cuniculus_Thorbecke inbred|F|V-REGION|1632734..1633032|299 nt|1| | | |99 AA|99+13=112| | | QFVLTQPQS.VSGSLGQTVSISCNRDSGNI....EDYYVHWYQQHPGKAPTTVIYND... ....DQRPSGVP.DRFSGSIDSTSNSASLTITGLLAEDEADYYCLSSDSSAN
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
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Patrice.Duroux@igh.cnrs.fr
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