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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>NW_001121240|IGHV1-1*01|Macaca mulatta|F|V-REGION|88177..88472|296 nt|1| | | |98 AA|98+8=106| |rev-compl| QVQLVQSGA.EIKQPGASVKLSCKASGYTF....TSYYMHWVRQAPGQGLEWIGLISPY. .NGNKGYAQNFQ.GRVTITTDTSTSTGYMELSSLRSEDTAVYYCTR >NW_001121240|IGHV2-1*01|Macaca mulatta|F|V-REGION|53863..54163|301 nt|1| | | |100 AA|100+7=107| |rev-compl| QVTLKESGP.ALVKPTQTLTLTCTFSGFSLS..TSGMGVGWIRQPSRKTLEWLAHIYWD. ..DDKRYSTSLK.SRLTISKDTSKNQVVLTMTNMDPMDTATYYCARR >NW_001121239|IGHV2-2*01|Macaca mulatta|ORF|V-REGION|183351..183651|301 nt|1| | | |100 AA|100+7=107| |rev-compl| QVTLKESDP.ALVKPTQTLTLTCTFSGFSLS..TSGMGVDGIRQPPGKALEWLARIDWD. ..DDKYYSPSLK.SRLTISKDTSKNQVVLTMTNMDPVDTATYYCARR >NW_001121240|IGHV3-10*01|Macaca mulatta|F|V-REGION|69832..70127|296 nt|1| | | |98 AA|98+8=106| |rev-compl| EVQLVESGG.GLVQPGGSLRLSCAASGFTF....SDDYMEWVRQAPGKGLEWVGQINPN. .GGTTFLMDSVK.GRFTISRDNAKNTLYLQINSLKIEDTAVYYCTR >NW_001121240|IGHV3-11*01|Macaca mulatta|F|V-REGION|61020..61309|290 nt|1| | | |96 AA|96+10=106| |rev-compl| EVQLAESGG.GLVQPGGSLRLSCAASGFTI....SSYWMSWVCQAPGKGLEWLSDIYG.. ..STMYYGDSVK.GLFTVSRDNAKNSLSLQMNSLRAEDTAVYYCTR >NW_001121240|IGHV3-12*01|Macaca mulatta|F|V-REGION|192..493|302 nt|1| | | |100 AA|100+6=106| |rev-compl| EVQLVESGG.GLVQPGGSLRLSCAASGFTF....SDYAMDWVRQAPGKGLEWVGFIRSKA YGGTAEYAASVK.GRFTISRDDSKNTAYLQMSSLKTEDTAVYYCTR >NW_001121239|IGHV3-13*01|Macaca mulatta|F|V-REGION|335828..336129|302 nt|1| | | |100 AA|100+6=106| |rev-compl| EVQLVESGA.GLVQPGGSLRLSCAASGFTF....SNSWMSWVRQAPGKGLEWVARIKRKA DGETADYAASVK.GRFTISRDDSKNTLYLQMNSLKTEDTAVYYCTT >NW_001121239|IGHV3-14*01|Macaca mulatta|F|V-REGION|314591..314886|296 nt|1| | | |98 AA|98+8=106| |rev-compl| EVQLVESGG.GLAKPGGSLRLSCAASGFTF....SNYWMHWVRQAPGKGLEWISAINSA. .GSSTYYADSVK.GRFTISRENAKNTLYLQMDGLRAEDTAVYYCAG >NW_001121239|IGHV3-17*01|Macaca mulatta|ORF|V-REGION|259121..259415|295 nt|1| | | |98 AA|98+9=107| |rev-compl| VVQLVESEG.NFVQPGGSLRLSCAVSGFTF....SSCDLDWIRHAPGKGLEWVSGISIA. ..GSTYYANSVN.SLFAISRENAKNTLYLQMNSLIAEDTAIYYCVSE >NW_001121239|IGHV3-18*01|Macaca mulatta|F|V-REGION|247716..248017|302 nt|1| | | |100 AA|100+6=106| |rev-compl| EVQLVESGG.GLVQPGGSLRLSCAASGFTF....SNYWMSWVRQAPGKGLDWVGFIKNKA DGGTAAYAESVK.GRFTISRDDSKNTLYLQMSSLNTEDTAVYYCTR >NW_001121239|IGHV3-20*01|Macaca mulatta|F|V-REGION|212976..213275|300 nt|1| | | |100 AA|100+6=106| |rev-compl| EVQLVESGG.GLVQPGGSLRLSCAASGFTF....SNYYMHWVRQAQGKGLEWVGLIRNKA NSYTTEYAAAVK.GRFTISRDDSKNTLYLQMSSLKTEDTALYYCTK >NW_001121239|IGHV3-21*01|Macaca mulatta|F|V-REGION|201644..201933|290 nt|1| | | |96 AA|96+10=106| |rev-compl| EVQLVESGG.GLVQPGRSLRPSCAASGFTF....SSYGMHWVRQAPEEGLVWVSYIGS.. ..STMYYADSVK.GRFTISRDNAKNSLYLQMNSLRAEDTAVYYCVR >NW_001121239|IGHV3-22*01|Macaca mulatta|F|V-REGION|159206..159503|298 nt|1| | | |99 AA|99+8=107| |rev-compl| EVQLVESGG.GLVQPGGSLRLSCTGSGFTF....SSYYMYWVRQAPGKGLEWVSAINTG. .GGSTWYTDSVK.GRFTISKENAKNTLYLQMDSLRAEDTAVYYCAKD >NW_001121239|IGHV3-24*01|Macaca mulatta|P|V-REGION|146169..146464|296 nt|1| | | |98 AA|98+8=106| |rev-compl| EVQLVESGG.GLAKPGGSLRLSCAAFGFTF....SSY*MHWVHQAPGKWLKWVSAISNG. .GINTYYPDSMK.GQFTISRDTTKNSLYLQMNSLRVEDTAVYYCMR >NW_001121240|IGHV3-5*01|Macaca mulatta|F|V-REGION|170925..171226|302 nt|1| | | |100 AA|100+6=106| |rev-compl| EVQLVESGG.GLVQPGGSLRPSCAASGFTF....SSSAMHWVRQASGKGLEWVGRIRSKS NNYATEYAASVK.GRFTISRDDSKNTAYLQMNSLKTEDTAVYYCAR >NW_001121240|IGHV3-6*01|Macaca mulatta|F|V-REGION|160994..161295|302 nt|1| | | |100 AA|100+6=106| |rev-compl| EVQLVESGG.GLVQPGGSLRLSCAASGFTF....SDYYMYWVRQAPGKGLEWVGFIRSKA YGGTAEYAASVK.GRFTISRDDSKSIAYLQMSSLKTEDTAVYYCTR >NW_001121240|IGHV3-7*01|Macaca mulatta|F|V-REGION|140440..140735|296 nt|1| | | |98 AA|98+8=106| |rev-compl| EVQLVESGG.GLVQPGGSLRLSCAASGFTF....GDYGMHWVRQAPGKGLEWVSSISNT. .GKTVYYADSVK.GRFTVSRDNAKNSLSLQMSSLRAEDTAVYYCTR >NW_001121240|IGHV3-9*01|Macaca mulatta|F|V-REGION|81515..81810|296 nt|1| | | |98 AA|98+8=106| |rev-compl| EVQLVESGG.GLAKPGGSLRLSCAASGFTF....SDYYMDWVRQAPGKGLEWVSRISNG. .GGSTWYADSVK.GRFTISRENAKNTLYLQMNSLRAEDTAVYYCAK >NW_001121240|IGHV4-2*01|Macaca mulatta|F|V-REGION|39195..39490|296 nt|1| | ||98 AA|98+8=106| | | QLQLQESGP.GLVKPSETLSLTCAVSGGSI....SSNYWSWIRQPPGKGLEWIGRISGS. .GGSTDYNPSLK.SRVTISTDTSKNQFSLKLSSVTAADTAVYYCAR >NW_001121240|IGHV5-1*01|Macaca mulatta|P|V-REGION|204228..204521|294 nt|1| | | |98 AA|98+8=106| |rev-compl| EVQLVQSGA.EVKRPGESLRISCKTSGYSF....TSYWISWVRQMPGRELEWMGSIHPG. .TSDTRYNPSFQ.GQVTISADSSISTVYLQWSSLKASDSAMYYCAR >NW_001121239|IGHV5-2*01|Macaca mulatta|F|V-REGION|278688..278983|296 nt|1| | | |98 AA|98+8=106| |rev-compl| EVQLVQSGA.EVKRPGESLKISCKTSGYSF....TSYWISWVRQMPGKGLEWMGAIDPS. .DSDTRYSPSFQ.GQVTISADKSISTAYLQWSSLKASDTATYYCAK >NW_001121239|IGHV6-1*01|Macaca mulatta|F|V-REGION|49592..49896|305 nt|1| | | |101 AA|101+5=106| |rev-compl| QVQLQESGP.GLVKPSQTLSLTCAISGDSVS..SNSATWNWIRQSPSRGLEWLGRTYYRS .KWYNDYAQSVQ.NRISINPDTSKNQFSLQLNSVTPEDMAVYYCAR >NW_001121240|IGHV7-1*01|Macaca mulatta|F|V-REGION|226869..227164|296 nt|1| | | |98 AA|98+8=106| |rev-compl| QVQLVQSGP.EVKQPGASVKVSCKASGYSF....TTYGMNWVRQAPGQGLEWMGWMNTY. .TGNPTYAQGFT.ERFVFSMDTSVSTVYLQISSLKGEDTAVYYCAR
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles
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