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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>M12832|TRGV1*01|Mus musculus_BALB/c|F|V-REGION|148..446|299 nt|1| | | |99 AA|99+9=108| | | LGQLEQTELSVTRETDESAQISCIVSLPYF....SNTAIHWYRQKAKK.FEYLIYVST.. ..NYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVWI >AF021335|TRGV1*02|Mus musculus|F|V-REGION|39912..40210|299 nt|1| | | |99 AA|99+9=108| | | LGQLEQTELSVTRETDESAQISCIVSLPYF....SNTAIHWYRQKAKK.FEYLIYVST.. ..NYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVWI >M26763|TRGV1*03|Mus musculus_BALB/c|(F)|V-REGION|44..340|297 nt|1| | | |99 AA|99+9=108| | | LGQLEQTELSVTRETDESAQISCIVSLPYF....SNTAIHWYRQKAKK.FEYLIYVST.. ..NYNQRPLGGKNKKIEASKDFQTSTSTLEINYLKKEDEATYYCAVWI >X03802|TRGV1*04|Mus musculus_C57BL/10|(F)|V-REGION|136..428|293 nt|1| | ||97 AA|97+9=106| | | LGQLEQTELSVTRATDESAQISCIVSLPYF....SNTAIHWYRQKAKK.FEYLIYVST.. ..NYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAV >U07554|TRGV1*05|Mus musculus_AKR|(F)|V-REGION|31..330|300 nt|1| | | |100 AA|100+9=109| | | LGQLKQTEVSVTRATDESAQISCIASLPDF....GNTEIHWYRQKAKQ.FEYLIYVQT.. ..NYNQRPLGGKHKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVWIS >M77017|TRGV1*06|Mus musculus_DBA/2|(F)|V-REGION|1..291|291 nt|1| | | |97 AA|97+11=108|partial in 5'| | ..QLEQTELSVTRETDESAQISCIVYLPYF....SNTAIHWYRQKAKK.FEYLIYVST.. ..NYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVWI >Z22847|TRGV1*07|Mus musculus_C57BL/10|(F)|V-REGION|1..291|291 nt|1| | | |97 AA|97+11=108|partial in 5'| | ..QLEQTELSVTRETDESAQISCIVSLPYF....SNTAIHWYRQKAKK.FEYLIYVST.. ..NYNQRPLGGKNKKIEASKDFQSSTSTLKINYLKKEDEATYYCAVWI >Z48588|TRGV1*08|Mus musculus_L-I|(F)|V-REGION|1..290|290 nt|1| | | |96 AA|96+11=107|partial in 5'| | ..QLKQTEVSVTRETDESAQISCIASLPDF....GNTEIHWYRQKAKQ.FEYLIYVQT.. ..NYNQRPLGGKHKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVW >M12831|TRGV2*01|Mus musculus_BALB/c|F|V-REGION|525..826|302 nt|1| | | |100 AA|100+8=108| | | LGQLEQTELSVTRETDENVQISCIVYLPYF....SNTAIHWYRQKTNQQFEYLIYVAT.. ..NYNQRPLGGKHKKIEASKDFKSSTSTLEINYLKKEDEATYYCAVWM >M54996|TRGV2*02|Mus musculus|(F)|V-REGION|160..461|302 nt|1| | ||100 AA|100+8=108| | | LGQLEQTELSVTRQTDENVQISCIVYLPYF....SNTAIHWYRQKTNQQFEYLIYVAT.. ..NYNQRPLGGKHKKIEASKDFKSSTSTLEINYLKKEDEATYYCADWM >X03985|TRGV2*03|Mus musculus_BALB/c|(F)|V-REGION|47..346|300 nt|1| | | |100 AA|100+8=108| | | LGQLEQTELSVTRETDENVQISCIVYLPYF....SNTAIHWYRQKTNQQFEYLIYVAT.. ..NYNQRPLGGKHKKIEASKDFKSSTSTLEINYLKKEDEATYYCAV*C >Z48589|TRGV2*04|Mus musculus_L-I|(F)|V-REGION|1..296|296 nt|1| | | |98 AA|98+10=108|partial in 5'| | ..QLEQTELSVTRETDESVQISCIVFLPYF....SNTAIHWYRQKTNQQFEYLIYVAT.. ..NYNQRPLEGKNKKIEASKDFKTSTSTLKINYLKKEDEATYYCAVWM >U07555|TRGV2*05|Mus musculus_AKR|[F]|V-REGION|1..220|220 nt|1| | | |73 AA|73+17=90|partial in 5'| | .........SVTRETDESVQISCIVFLPYF....SNTAIHWYRQKTNQQFEYLIYVAT.. ..NYNQRPLEGKNKKIEASKDFKTSTSTLK >AF037352|TRGV3*01|Mus musculus|F|V-REGION|66251..66552|302 nt|1| | | |100 AA|100+8=108| | | LGQLEQTELSVTRATDESAQISCIVSLPCF....SNTAIHWYRQKPNQQFEYLIYVET.. ..NYNQQPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVWI >M12833|TRGV3*02|Mus musculus_BALB/c|F|V-REGION|1..86|86 nt|1| | | |28 AA|28+80=108|partial in 5'| | ............................................................ ....................DFQTSTSTLEINYLKKEDEATYYCAVWI >U07556|TRGV3*03|Mus musculus_AKR|[F]|V-REGION|1..220|220 nt|1| | | |73 AA|73+17=90|partial in 5'| | .........SVTRATDESAQISCIVSLPYF....SNSVIHWYRQKPNQQFEYLIYVET.. ..NYNQQPLGGKNKKIEASKDFKSSTSTLK >AF037352|TRGV4*01|Mus musculus|F|V-REGION|8460..8761|302 nt|1| | | |100 AA|100+8=108| | | HGKLEQPEISISRPRDETAQISCKVFIESF....RSVTIHWYRQKPNQGLEFLLYVLA.. ..TPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG* >M30171|TRGV4*02|Mus musculus_BALB/c|(F)|V-REGION|1..296|296 nt|1| | | |98 AA|98+10=108|partial in 5'| | ..KLEQPEISISRPRDETAQISCKVFIESF....RSVTIHWYRQKPNQGLEFLLYVLA.. ..TPTHVFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGQ >M26765|TRGV4*03|Mus musculus_C57BL/10|(F)|V-REGION|1..273|273 nt|1| | | |90 AA|90+19=109|partial in 5'| | ...........FRARDETAQISCKVFIKSF....RSVTIHWYRQKPNQSLEFLLYVLA.. ..TPTHIFLDKEYKKMEASKDPSASTSILTIYSLEEEDEAIYYCSYG*I >Z12299|TRGV4*04|Mus musculus_DBA/2|(F)|V-REGION|1..288|288 nt|1| | | |96 AA|96+13=109|partial in 5'| | .....QPEISISRARDETAQISCKVFIESF....RSVTIHWYRQKPNQGLEFLLYVLA.. ..TPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYA*Y >Z48590|TRGV4*05|Mus musculus_L-I|(F)|V-REGION|1..287|287 nt|1| | | |95 AA|95+13=108|partial in 5'| | .....QPEISISRARDETAQISCKVFIESF....RSVTIHWYRQKPNQGLEFLLYVLA.. ..TPTHIFLDKEYKKMEASKNPSASTSTLTIYSLEEEDEAIYYCSYG* >AF037352|TRGV5*01|Mus musculus|F|V-REGION|15678..15970|293 nt|1| | | |97 AA|97+11=108| | | DSWISQDQLSFTRRPNKTVHISCKLSGVPL....HNTIVHWYQLKEGEPLRRIFYGS... ...VKTYKQDKSHSRLEIDEK.DDGTFYLIINNVVTSDEATYYCACWD >D29793|TRGV6*01|Mus musculus_C57BL/6|F|V-REGION|2057..2363|307 nt|1| | | |102 AA|102+6=108| | | TSLTSPLGSYVIKRKGNTAFLKCQIKTSVQK...PDAYIHWYQEKPGQRLQRMLCSSSK. ..ENIVYEKDFSDERYEARTWQSDLSSVLTIHQVREEDTGTYYCACWD >AF037352|TRGV6*02|Mus musculus|F|V-REGION|13868..14174|307 nt|1| | | |102 AA|102+6=108| | | SSLTSPLGSYVIKRKGNTAFLKCQIKTSVQK...PDAYIHWYQEKPGQRLQRMLCSSSK. ..ENIVYEKDFSDERYEARTWQSDLSSVLTIHQVTEEDTGTYYCACWD >M13338|TRGV6*03|Mus musculus_BALB/c|(F)|V-REGION|10..315|306 nt|1| | | |102 AA|102+6=108| | | TSLTSPLGSYVIKRKGNTAFLKCQIKTSVQK...PDAYIHWYQEKPGQRLQRMLCSSSK. ..ETIVYEKDFSDERYEARTWQSDLSSVLTIHQVTEEDTGTYYCACWD >Z48592|TRGV6*04|Mus musculus_L-I|(F)|V-REGION|1..295|295 nt|1| | | |98 AA|98+10=108|partial in 5'| | ....SPLGSYVIKRKGNTAFLKCQIKTGVQK...PDAYIHWYQEKPGQHLQRMLCSSSK. ..ENIVYEKDFSDERYEARTWQSDLSSVLTIHQVTEEDTGTYYCACWD >D29794|TRGV7*01|Mus musculus_C57BL/6|F|V-REGION|2393..2688|296 nt|1| | | |98 AA|98+10=108| | | SSNLEERIMSITKLEGSSAIMTCDTHRTG.......TYIHWYRFQKGRAPEHLLYYNFV. .SSTTVVDSRFNSEKYHVYEG.PDKRYKFVLRNVEESDSALYYCASWA >AF037352|TRGV7*02|Mus musculus|F|V-REGION|1465..1760|296 nt|1| | | |98 AA|98+10=108| | | SSNLEERIMSITKLEGSSAIMTCDTHRTG.......TYIHWYRFQKGRAPEHLLYYNFV. .SSTTVVDSRFNLEKYHVYEG.PDKRYKFVLRNVEESDSALYYCASWA
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles
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