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IMGT®, the international ImMunoGeneTics information system® | http://www.imgt.org |
Citing IMGT/GENE-DB
: Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005).
PMID: 15608191
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IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates
The FASTA header contains 15 fields separated by '|': 1. IMGT/LIGM-DB accession number(s) 2. IMGT gene and allele name 3. species 4. IMGT allele functionality 5. exon(s), region name(s), or extracted label(s) 6. start and end positions in the IMGT/LIGM-DB accession number(s) 7. number of nucleotides in the IMGT/LIGM-DB accession number(s) 8. codon start, or 'NR' (not relevant) for non coding labels 9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB 10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB 11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors 12. number of amino acids (AA): this field indicates that the sequence is in amino acids 13. number of characters in the sequence: nt (or AA)+IMGT gaps=total 14. partial (if it is) 15. reverse complementary (if it is)
>CU467669|IGLV1-15*01|Sus scrofa|P|V-REGION|153073..153371|299 nt|1| | | |99 AA|99+14=113| | | QAVLTQPPS.ESGSLGQRVTLSCTGSSSNIG...GGNSVNWSQPLPGKVPRSVFTYA... ....NLMAIAAP.DQFSGFK..SGSSGTLTITGLQAEDDAEYYCTAGGDSLDG >CU467669|IGLV2-6*01|Sus scrofa|F|V-REGION|51321..51611|291 nt|1| | | |97 AA|97+16=113| | | QSALTQPPS.VSRNLKEMETISCAGTSSDI.....GGYVSWYQQHPGLAPKFLIYYV... ....NTRASGIP.DGFCGSK..SGNTASLTISGLQAEDEADYYCSSPRSGGTL >CU467669|IGLV3-1*01|Sus scrofa|P|V-REGION|15612..15882|271 nt|1| | | |90 AA|90+23=113| | | SCELTQPPS.LSVSLGQMARITCGGNNIG......YKHTFWYQQKVGQAPVLVMYSD... ....SHQLSGIP.ELFSGS........TLTISRARAEDEEDYYCAVADGKGSS >CU467599|IGLV3-1*02|Sus scrofa|P|V-REGION|87766..88036|271 nt|1| | | |90 AA|90+23=113| | | SCELTQPPS.LSVSLGQMARITCGGNNIG......YKHTFWYQQKVGQAPVLVMYSD... ....SHQLSGIP.ELFSGS........TLTISRARAEDEEDYYCAVADGKGSS >CU467669|IGLV3-2*01|Sus scrofa|F|V-REGION|21397..21684|288 nt|1| | | |96 AA|96+17=113| |rev-compl| SYEVTQPPS.VSVNPGQRASITCEGNNIG......RKDIQWYQQKPGQAPVLFIYED... ....TNRPSGIP.ERFSASK..SGNTATLTISGAQAEDEADYYCQSYDDSYTP >CU467599|IGLV3-2*02|Sus scrofa|F|V-REGION|73310..73597|288 nt|1| | | |96 AA|96+17=113| |rev-compl| SYEVTQPPS.VSVNPGQRASITCEGNNIG......RKDIQWYQQKPGQAPVLFIYED... ....TNRPSGIP.ERFSASK..SGNTATLTISGAQAEDEADYYCQSYDDSYTP >CU467669|IGLV3-3*01|Sus scrofa|F|V-REGION|27504..27791|288 nt|1| | | |96 AA|96+17=113| |rev-compl| SYELTQPSS.ESVALGNTAKITCSGDLLD......EKYTQWYQQKPGQAPLLLIYKD... ....SERPSGIP.ERFSGSS..SGKTATLTITGAQAEDEADYYCQSADSIDNA >CU467599|IGLV3-3*02|Sus scrofa|F|V-REGION|79444..79731|288 nt|1| | | |96 AA|96+17=113| |rev-compl| SYELTQPSS.ESVALGNTAKITCSGDLLD......EKYTRWYQQKPGQAPLLLIYKD... ....SERPSGIP.ERFSGSS..SGKTATLTITGAQAEDEADYYCQSADSSDNA >CU467669|IGLV3-4*01|Sus scrofa|F|V-REGION|32970..33257|288 nt|1| | | |96 AA|96+17=113| |rev-compl| SSKLTQPPG.VSVSLGGTASIACQGDNFG......SYYAHWYQQKPGQSPMLVIYEY... ....NKRASGIP.DRFSGSK..SGNTATLTISGAQAEDEADYYCQSSDDSYTP >CU467599|IGLV3-4*02|Sus scrofa|F|V-REGION|84906..85193|288 nt|1| | | |96 AA|96+17=113| |rev-compl| SSQLTQPPG.VSVSLGGTASITCQGGNFG......SYYAHWYKQKPGQSPMLVIYEY... ....NKRASGIP.DRFSGSK..SGNTATLTISGAQAEDEADYYCQSSDDSYTP >CU467669|IGLV3-5*01|Sus scrofa|F|V-REGION|40954..41241|288 nt|1| | | |96 AA|96+17=113| |rev-compl| SSKLTQPPG.VSVSLGGTASITCQGANFG......SYYAHWYQQKPGQSPELVIYEY... ....PEIFLGFL.ERFSVSR..TGDTATLTISGAQAEDEADYYCQVYDGGYHV >CU467669|IGLV5-14*01|Sus scrofa|F|V-REGION|147439..147750|312 nt|1| | | |104 AA|104+8=112| | | QAVLTQPPS.LSASPGPSARLPCTLSSGSSV...GSYHISWYQRKPGRPPWYLLRFHFAS .SKDQGSGVPSC.FSGDKDA..SAHAGLLLISGLQPEDKADCDCLNWQSSAS >CU467669|IGLV7-7*01|Sus scrofa|ORF|V-REGION|114309..114601|293 nt|1| | | |97 AA|97+14=111| | | SQMVTQEIS.LSTTSGETVTLTCGSSAGAVT...TSNYASWVQQKPYEVLWGLIGGT... ....STQIPGVP.ARFSGSL..LGDKAALTRSGAQSKDEADYYYVLWFSNV >CU467669|IGLV7-9*01|Sus scrofa|ORF|V-REGION|120432..120710|279 nt|1| | | |93 AA|93+14=107| |rev-compl| PSCVTQEPS.KTVSPGVTVTFTCGSSMGVVT...IGHYPCWFQQKPGQAPRTLIYDT... ....NSKLSWTP.AWFSGSF..LGDKAALILSRAQPQDQVEYYSGAQ >CU467669|IGLV8-10*01|Sus scrofa|F|V-REGION|130387..130682|296 nt|1| | | |98 AA|98+14=112| |rev-compl| SQTVIQEPA.MSVSPGGTVTLTCAFSSGSVT...TSNYPSWFQQTPGQPPRLLIYRT... ....NNRPTGVP.SRFSGAI..SGNKAALTITGAQANDEADYFCTLYKSSAN >CU467669|IGLV8-13*01|Sus scrofa|F|V-REGION|143667..143962|296 nt|1| | | |98 AA|98+14=112| |rev-compl| SQTVIQEPA.MSVSPGGTVTLTCAFSSGSVT...TSNYPSWFQQTPGQPPRQLIYST... ....NNRPTGVP.SRFSGAI..SGNKAALTITGAQAEDEADYFCALYKSSAN >CU467669|IGLV8-16*01|Sus scrofa|P|V-REGION|159174..159477|304 nt|1| | | |101 AA|101+14=115| |rev-compl| SQTVIQEPA.MSVSLGGTVTLTCAFSSGSVT...SSNYPSWYQQTPGQPPRQLIYST... ....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALYKGSGTYT* >CU468977|IGLV8-18*01|Sus scrofa|F|V-REGION|109562..109857|296 nt|1| | | |98 AA|98+14=112| | | SQTVIQEPA.MSVSLGGTVTLTCAFSSGSVT...SSNYPGWFQQTPGQPPRTVIYST... ....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALYKSCTN >CU468977|IGLV8-19*01|Sus scrofa|F|V-REGION|92483..92778|296 nt|1| | | |98 AA|98+14=112| | | SQTVIQEPA.MSVSLGGTVTLTCAFSSGSVT...SSNNPGWFQQTPGQPPRTVIYQT... ....NNRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALGKSCTN >CU468665|IGLV8-19*02|Sus scrofa|F|V-REGION|58901..59196|296 nt|1| | | |98 AA|98+14=112| | | SQTVIQEPA.MSVSLGGTVTLTCAFSSGSVT...SSNYPSWYQQTPGQPPRQLIYST... ....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALYKSCTN >CU468977|IGLV8-21*01|Sus scrofa|P|V-REGION|68912..69207|296 nt|1| | | |98 AA|98+14=112| | | SQTVIQEPA.MSVSPGGTVTLTCAFSSGSVT...TSNYPGWYQQTPGQPPRQLIYQT... ....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALEKSSAN >CU468665|IGLV8-21*02|Sus scrofa|P|V-REGION|76085..76380|296 nt|1| | | |98 AA|98+14=112| | | SQTVIQEPA.MSVSPGGTVTLTCAFSSGSVT...TSNYPSWFQQTPGQPPRQLIYQT... ....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALEKSSAN
Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc
IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as
"IMGT®, the international ImMunoGeneTics information system®
http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text,
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida
Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
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Patrice.Duroux@igh.cnrs.fr
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