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for using IMGT/GENE-DB

IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org

Citing IMGT/GENE-DB : Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005). PMID: 15608191

IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates

IMGT/GENE-DB reference sequences in FASTA format:

Amino acids sequences with gaps according to the IMGT unique numbering
for F+ORF+in-frame P with IMGT Gaps alleles including orphons


The FASTA header contains 15 fields separated by '|':

1. IMGT/LIGM-DB accession number(s)
2. IMGT gene and allele name
3. species
4. IMGT allele functionality
5. exon(s), region name(s), or extracted label(s)
6. start and end positions in the IMGT/LIGM-DB accession number(s)
7. number of nucleotides in the IMGT/LIGM-DB accession number(s)
8. codon start, or 'NR' (not relevant) for non coding labels
9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB
10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB
11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors
12. number of amino acids (AA): this field indicates that the sequence is in amino acids
13. number of characters in the sequence: nt (or AA)+IMGT gaps=total
14. partial (if it is)
15. reverse complementary (if it is)

Number of results = 22
>CU467669|IGLV1-15*01|Sus scrofa|P|V-REGION|153073..153371|299 nt|1| | | |99 AA|99+14=113| | |
QAVLTQPPS.ESGSLGQRVTLSCTGSSSNIG...GGNSVNWSQPLPGKVPRSVFTYA...
....NLMAIAAP.DQFSGFK..SGSSGTLTITGLQAEDDAEYYCTAGGDSLDG
>CU467669|IGLV2-6*01|Sus scrofa|F|V-REGION|51321..51611|291 nt|1| | | |97 AA|97+16=113| | |
QSALTQPPS.VSRNLKEMETISCAGTSSDI.....GGYVSWYQQHPGLAPKFLIYYV...
....NTRASGIP.DGFCGSK..SGNTASLTISGLQAEDEADYYCSSPRSGGTL
>CU467669|IGLV3-1*01|Sus scrofa|P|V-REGION|15612..15882|271 nt|1| | | |90 AA|90+23=113| | |
SCELTQPPS.LSVSLGQMARITCGGNNIG......YKHTFWYQQKVGQAPVLVMYSD...
....SHQLSGIP.ELFSGS........TLTISRARAEDEEDYYCAVADGKGSS
>CU467599|IGLV3-1*02|Sus scrofa|P|V-REGION|87766..88036|271 nt|1| | | |90 AA|90+23=113| | |
SCELTQPPS.LSVSLGQMARITCGGNNIG......YKHTFWYQQKVGQAPVLVMYSD...
....SHQLSGIP.ELFSGS........TLTISRARAEDEEDYYCAVADGKGSS
>CU467669|IGLV3-2*01|Sus scrofa|F|V-REGION|21397..21684|288 nt|1| | | |96 AA|96+17=113| |rev-compl|
SYEVTQPPS.VSVNPGQRASITCEGNNIG......RKDIQWYQQKPGQAPVLFIYED...
....TNRPSGIP.ERFSASK..SGNTATLTISGAQAEDEADYYCQSYDDSYTP
>CU467599|IGLV3-2*02|Sus scrofa|F|V-REGION|73310..73597|288 nt|1| | | |96 AA|96+17=113| |rev-compl|
SYEVTQPPS.VSVNPGQRASITCEGNNIG......RKDIQWYQQKPGQAPVLFIYED...
....TNRPSGIP.ERFSASK..SGNTATLTISGAQAEDEADYYCQSYDDSYTP
>CU467669|IGLV3-3*01|Sus scrofa|F|V-REGION|27504..27791|288 nt|1| | | |96 AA|96+17=113| |rev-compl|
SYELTQPSS.ESVALGNTAKITCSGDLLD......EKYTQWYQQKPGQAPLLLIYKD...
....SERPSGIP.ERFSGSS..SGKTATLTITGAQAEDEADYYCQSADSIDNA
>CU467599|IGLV3-3*02|Sus scrofa|F|V-REGION|79444..79731|288 nt|1| | | |96 AA|96+17=113| |rev-compl|
SYELTQPSS.ESVALGNTAKITCSGDLLD......EKYTRWYQQKPGQAPLLLIYKD...
....SERPSGIP.ERFSGSS..SGKTATLTITGAQAEDEADYYCQSADSSDNA
>CU467669|IGLV3-4*01|Sus scrofa|F|V-REGION|32970..33257|288 nt|1| | | |96 AA|96+17=113| |rev-compl|
SSKLTQPPG.VSVSLGGTASIACQGDNFG......SYYAHWYQQKPGQSPMLVIYEY...
....NKRASGIP.DRFSGSK..SGNTATLTISGAQAEDEADYYCQSSDDSYTP
>CU467599|IGLV3-4*02|Sus scrofa|F|V-REGION|84906..85193|288 nt|1| | | |96 AA|96+17=113| |rev-compl|
SSQLTQPPG.VSVSLGGTASITCQGGNFG......SYYAHWYKQKPGQSPMLVIYEY...
....NKRASGIP.DRFSGSK..SGNTATLTISGAQAEDEADYYCQSSDDSYTP
>CU467669|IGLV3-5*01|Sus scrofa|F|V-REGION|40954..41241|288 nt|1| | | |96 AA|96+17=113| |rev-compl|
SSKLTQPPG.VSVSLGGTASITCQGANFG......SYYAHWYQQKPGQSPELVIYEY...
....PEIFLGFL.ERFSVSR..TGDTATLTISGAQAEDEADYYCQVYDGGYHV
>CU467669|IGLV5-14*01|Sus scrofa|F|V-REGION|147439..147750|312 nt|1| | | |104 AA|104+8=112| | |
QAVLTQPPS.LSASPGPSARLPCTLSSGSSV...GSYHISWYQRKPGRPPWYLLRFHFAS
.SKDQGSGVPSC.FSGDKDA..SAHAGLLLISGLQPEDKADCDCLNWQSSAS
>CU467669|IGLV7-7*01|Sus scrofa|ORF|V-REGION|114309..114601|293 nt|1| | | |97 AA|97+14=111| | |
SQMVTQEIS.LSTTSGETVTLTCGSSAGAVT...TSNYASWVQQKPYEVLWGLIGGT...
....STQIPGVP.ARFSGSL..LGDKAALTRSGAQSKDEADYYYVLWFSNV
>CU467669|IGLV7-9*01|Sus scrofa|ORF|V-REGION|120432..120710|279 nt|1| | | |93 AA|93+14=107| |rev-compl|
PSCVTQEPS.KTVSPGVTVTFTCGSSMGVVT...IGHYPCWFQQKPGQAPRTLIYDT...
....NSKLSWTP.AWFSGSF..LGDKAALILSRAQPQDQVEYYSGAQ
>CU467669|IGLV8-10*01|Sus scrofa|F|V-REGION|130387..130682|296 nt|1| | | |98 AA|98+14=112| |rev-compl|
SQTVIQEPA.MSVSPGGTVTLTCAFSSGSVT...TSNYPSWFQQTPGQPPRLLIYRT...
....NNRPTGVP.SRFSGAI..SGNKAALTITGAQANDEADYFCTLYKSSAN
>CU467669|IGLV8-13*01|Sus scrofa|F|V-REGION|143667..143962|296 nt|1| | | |98 AA|98+14=112| |rev-compl|
SQTVIQEPA.MSVSPGGTVTLTCAFSSGSVT...TSNYPSWFQQTPGQPPRQLIYST...
....NNRPTGVP.SRFSGAI..SGNKAALTITGAQAEDEADYFCALYKSSAN
>CU467669|IGLV8-16*01|Sus scrofa|P|V-REGION|159174..159477|304 nt|1| | | |101 AA|101+14=115| |rev-compl|
SQTVIQEPA.MSVSLGGTVTLTCAFSSGSVT...SSNYPSWYQQTPGQPPRQLIYST...
....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALYKGSGTYT*
>CU468977|IGLV8-18*01|Sus scrofa|F|V-REGION|109562..109857|296 nt|1| | | |98 AA|98+14=112| | |
SQTVIQEPA.MSVSLGGTVTLTCAFSSGSVT...SSNYPGWFQQTPGQPPRTVIYST...
....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALYKSCTN
>CU468977|IGLV8-19*01|Sus scrofa|F|V-REGION|92483..92778|296 nt|1| | | |98 AA|98+14=112| | |
SQTVIQEPA.MSVSLGGTVTLTCAFSSGSVT...SSNNPGWFQQTPGQPPRTVIYQT...
....NNRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALGKSCTN
>CU468665|IGLV8-19*02|Sus scrofa|F|V-REGION|58901..59196|296 nt|1| | | |98 AA|98+14=112| | |
SQTVIQEPA.MSVSLGGTVTLTCAFSSGSVT...SSNYPSWYQQTPGQPPRQLIYST...
....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALYKSCTN
>CU468977|IGLV8-21*01|Sus scrofa|P|V-REGION|68912..69207|296 nt|1| | | |98 AA|98+14=112| | |
SQTVIQEPA.MSVSPGGTVTLTCAFSSGSVT...TSNYPGWYQQTPGQPPRQLIYQT...
....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALEKSSAN
>CU468665|IGLV8-21*02|Sus scrofa|P|V-REGION|76085..76380|296 nt|1| | | |98 AA|98+14=112| | |
SQTVIQEPA.MSVSPGGTVTLTCAFSSGSVT...TSNYPSWFQQTPGQPPRQLIYQT...
....NSRPTGVP.SRFSGAI..SGNKATLTITGAQAEDEADYFCALEKSSAN


Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc

IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)


-> IMGT/GENE-DB Documentation
-> IMGT/GENE-DB Query page
-> IMGT/GENE-DB direct links
-> IMGT/GENE-DB statistics
-> IMGT/GENE-DB program versions
-> IMGT/GENE-DB data updates

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text, Lefranc, M.-P. et al., Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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