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Citing IMGT/GENE-DB : Giudicelli, V. et al. Nucleic Acids Res., 33: D256 - D261 (2005). PMID: 15608191

IMGT/GENE-DB program version: 3.1.21 (17 January 2019)
IMGT/GENE-DB data updates

IMGT/GENE-DB reference sequences in FASTA format:

Amino acids sequences with gaps according to the IMGT unique numbering
for F+ORF+in-frame P with IMGT Gaps alleles including orphons


The FASTA header contains 15 fields separated by '|':

1. IMGT/LIGM-DB accession number(s)
2. IMGT gene and allele name
3. species
4. IMGT allele functionality
5. exon(s), region name(s), or extracted label(s)
6. start and end positions in the IMGT/LIGM-DB accession number(s)
7. number of nucleotides in the IMGT/LIGM-DB accession number(s)
8. codon start, or 'NR' (not relevant) for non coding labels
9. +n: number of nucleotides (nt) added in 5' compared to the corresponding label extracted from IMGT/LIGM-DB
10. +n or -n: number of nucleotides (nt) added or removed in 3' compared to the corresponding label extracted from IMGT/LIGM-DB
11. +n, -n, and/or nS: number of added, deleted, and/or substituted nucleotides to correct sequencing errors, or 'not corrected' if non corrected sequencing errors
12. number of amino acids (AA): this field indicates that the sequence is in amino acids
13. number of characters in the sequence: nt (or AA)+IMGT gaps=total
14. partial (if it is)
15. reverse complementary (if it is)

Number of results = 8
>AABR03078283|IGLV1S1*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|28839..29132|294 nt|1| | | |98 AA|98+14=112| | |
QAVVTQESA.LTTLPGGTVTLTCHSSTGAVT...TSNYANWIQEKADHLFTGIVGDT...
....SNRAPGAP.ARFSGSL..LEGKAALTITGAQIEDEATYFCSLWYSNHF
>AABR03078283|IGLV2S1*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|65417..65719|303 nt|1| | | |101 AA|101+13=114| | |
QFTLTQPKS.VSGSLRSTITIPCERSSGDI....GDSYVSWYQQHLGRPPINVIYAD...
....DQRPSEVS.DRFSGSIDSSSNSASLTITNLQMDDEADYFCQSYDSNIDIN
>AABR03078283|IGLV3S1*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|105325..105621|297 nt|1| | | |99 AA|99+13=112| | |
QAVLTQPNS.VSTSLGSTVKLSCTLSSGNI....ENNYVHWYQQYEGRSPTTMIYND...
....DKRPDGVP.DRFSGSIDSSSNSAFLTINNVEIEDEAIYFCHSYVSSIN
>AABR03078979|IGLV3S2*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|23502..23798|297 nt|1| | | |99 AA|99+13=112| | |
QFVLTQPNS.VSTNLGSTVKLSCKRSTGNI....GSNYVNWYQQHEGRSPTTMIYRD...
....DKRPDGVP.DRFSGSIDRSSNSALLTINNVQTEDEADYFCQSYSSGIN
>AABR03078834|IGLV3S3*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|21325..21621|297 nt|1| | | |99 AA|99+13=112| | |
QFVLTQSNS.MSTSLGSTVKLSCKRSTGNI....GSSYVYWYQQHEGRSPTTMIYDD...
....DKRPDGVP.DRFSGSIDSSSNSAFLTINNVQIEDEAIYFCQSYSSGIN
>AC109901|IGLV3S4*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|137299..137595|297 nt|1| | ||99 AA|99+13=112| |rev-compl|
QVVLTQPKS.VSTSLESTVKLSCKLNSGNI....GSYYIHWYQQHEGRSPTTMIYRD...
....DKRPDGVP.DRFSGSIDSSSNSAFLTINNVQTEDEAIYFCHSYDSSIN
>AC109901|IGLV3S5*01|Rattus norvegicus_BN/SsNHsdMCW|F|V-REGION|122770..123066|297 nt|1| | ||99 AA|99+13=112| |rev-compl|
QVVLTQPNT.VSTSLGITVKLSCKCSSGNI....GSYSVHWYQQHEGRSPTTMIYKD...
....DKRPDGVP.DRFSGSIDSSSNSAFLTINNVQTEDEAVYFCHSYDSNIN
>AC133058|IGLV4S1*01|Rattus norvegicus|F|V-REGION|133011..133299|289 nt|1| | ||96 AA|96+17=113| | |
SYELIQPPS.ASVTLGNTVSLTCVGDELS......KRYAQWYQQKPDKTIVSVIYKD...
....SERPSGIS.DRFSGS..SSGTTATLTIHGTLAEDEADYYCLSTYSDDNL


Authors: Hugo Duvergey, Denis Moreno, Mansour Saljoqi, Véronique Giudicelli and Marie-Paule Lefranc

IMGT/GENE-DB scientific responsibles: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)


-> IMGT/GENE-DB Documentation
-> IMGT/GENE-DB Query page
-> IMGT/GENE-DB direct links
-> IMGT/GENE-DB statistics
-> IMGT/GENE-DB program versions
-> IMGT/GENE-DB data updates

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text, Lefranc, M.-P. et al., Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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