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Use the forms below to explore the latest version of the database.
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1. Get all structures.
Displays all the antibody structures in the PDB.
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2. Get single PDB structure.
Please enter a four-letter PDB code,
e.g.
1AHW.
The supplied PDB code is not valid.
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3. Advanced Search.
Use the options given below to constrain your search.
Method
(?)
:
*
X-RAY DIFFRACTION
ELECTRON MICROSCOPY / HOMOLOGY MODEL
ELECTRON MICROSCOPY
SOLUTION NMR
SOLUTION SCATTERING / HOMOLOGY MODEL
X-RAY DIFFRACTION, 1
SOLUTION SCATTERING
SOLID-STATE NMR
SOLUTION NMR / HOMOLOGY MODEL
Organism
(?)
:
*
BOS TAURUS (CATTLE)
CAMELIDAE (CAMELID)
CAMELUS DROMEDARIUS (ARABIAN CAMEL)
CANIS LUPUS FAMILIARIS
CHIMERIC AEQUOREA VICTORIA/VICUGNA PACOS
CHIMERIC CANIS LUPUS FAMILIARIS/MUS MUSCULUS
CHIMERIC HOMO SAPIENS/MURINAE
CHIMERIC HOMO SAPIENS/MUS MUSCULUS
CHIMERIC HOMO SAPIENS/MUS MUSCULUS; LAMA GLAMA
CHIMERIC HOMO SAPIENS/ORYCTOLAGUS CUNICULUS
CHIMERIC HOMO SAPIENS/RATTUS NORVEGICUS
CHIMERIC HOMO SAPIENS/SYNTHETIC CONSTRUCT
CHIMERIC MUS MUSCULUS/SYNTHETIC CONSTRUCT
CRICETULUS MIGRATORIUS (ARMENIAN HAMSTER)
GALLUS GALLUS (CHICKEN)
GRAPEVINE FANLEAF VIRUS
HELICOBACTER PYLORI
HOMO SAPIENS (HUMAN)
HOMO SAPIENS; CHIMERIC HOMO SAPIENS/HUMAN IMMUNODEFICIENCY VIRUS 1
HOMO SAPIENS; MUS MUSCULUS
HUMAN ENTEROVIRUS
ICTALURUS PUNCTATUS (CHANNEL CATFISH)
LAMA GLAMA (LLAMA)
LAMA GLAMA; CHIMERIC HOMO SAPIENS/MUS MUSCULUS
LAMA PACOS (ALPACA)
LEPUS CURPAEUMS
MACACA MULATTA (RHESUS MONKEY)
MUS
MUS MUSCULUS (HOUSE MOUSE)
MUS MUSCULUS; SYNTHETIC CONSTRUCT
ORYCTOLAGUS CUNICULUS (RABBIT)
OTHER SEQUENCES
PAN TROGLODYTES (CHIMPANZEE)
PHOCA VITULINA (HARBOR SEAL)
RATTUS NORVEGICUS (NORWAY RAT)
RATTUS RATTUS (BLACK RAT)
SYNTHETIC CONSTRUCT
UNIDENTIFIED
UNKNOWN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS TC-83
VICUGNA PACOS (ALPACA)
Resolution cutoff
(?)
:
*
4.0
3.9
3.8
3.7
3.6
3.5
3.4
3.3
3.2
3.1
3.0
2.9
2.8
2.7
2.6
2.5
2.4
2.3
2.2
2.1
2.0
1.9
1.8
1.7
1.6
1.5
1.4
1.3
1.2
1.1
1.0
Rfactor cutoff
(?)
:
*
0.31
0.30
0.29
0.28
0.27
0.26
0.25
0.24
0.23
0.22
0.21
0.20
0.19
0.18
0.17
0.16
0.15
0.14
0.13
0.12
0.11
In complex?
(?)
:
*
True
False
Antigen type
(?)
:
*
protein
peptide
carbohydrate
nucleic-acid
hapten
polypeptide (> length)
polypeptide (< length)
Polypeptide length
(?)
:
Light chain type
(?)
:
*
Lambda
Kappa
Has constant region?
(?)
:
*
True
False
Has affinity value?
(?)
:
*
True
False
Residue type at Chothia position
(?)
:
Add another position
Get structures
Non-redundant search.
4. Non-redundant search.
Get a non-redundant set of antibody structures or antibody-antigen complexes from the database. Sequence clustering is performed using
CD-HIT
.
Ab allowed sequence identity (%)
(?)
:
99%
95%
90%
85%
80%
75%
70%
Only structures with paired heavy and light chains?
(?)
:
True
False
In complex?
(?)
:
*
True
False
Antigen type
(?)
:
polypeptide
protein
peptide
polypeptide (> length)
polypeptide (< length)
Ag allowed sequence identity (%)
(?)
:
99%
95%
90%
85%
80%
75%
70%
Polypeptide length
(?)
:
Resolution cutoff
(?)
:
4.0
3.9
3.8
3.7
3.6
3.5
3.4
3.3
3.2
3.1
3.0
2.9
2.8
2.7
2.6
2.5
2.4
2.3
2.2
2.1
2.0
1.9
1.8
1.7
1.6
1.5
1.4
1.3
1.2
1.1
1.0
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