pyHVis3D calculates hydrogen bonds (H-bonds) resulting from molecular simulation trajectories and allows for an easy to interpret 3D visualisation.
pyHVis3D is available as standalone executable for Fedora 25 and Windows 7 as well as python source code. The software (including manual and test cases) can be downloaded here:
An older and deprecated version based on Gromacs, Matlab, and VMD (entitled H-Vis-3D) is available here. Use of this version is no longer recommended.