Sphinx Loop Prediction

Sphinx Job Submission

Sphinx is a protein loop modelling algorithm that combines knowledge-based and ab initio approaches. Given a protein structure, location of the loop to be modelled and the sequence of that loop, it searches a database of fragments for sections of other proteins that are shorter than the target loop, but that may have some structural similarity. By using ab initio techniques, the loop conformations can be made to be the correct length. Once a set of conformations has been produced, a fast statistical potential is used to cull the set to only 500 structures, which are then scored using SOAP-Loop (Dong et al., 2013) to produce a ranking.

If you'd rather use the H3-specific Sphinx, please click here.

If you are not sure how to use Sphinx, please look at the submission guidelines here.

If you would like to see what kind of results you can expect, please see here.

If you have not already done so, we recommend first running FREAD, a knowledge-based algorithm which can also produce accurate predictions but requires less computation time. It can be found here.

For a full description of the pipeline, or if you use this software, please refer to:
Marks, Cet al. Sphinx: Merging knowledge-based and ab initio approaches to improve protein loop prediction. Bioinformatics. (2017)

Currently running 0 job(s). Max permitted is 20

Job IDJob typeSubmission timeStatus
SEJ (?)SphinxH3Tuesday 19th of February 2019 10:24:06 AMFailed
SEJ (?)SphinxTuesday 19th of February 2019 08:50:19 AMFailed
SEJ (?)SphinxMonday 18th of February 2019 09:18:45 PMDone
SEJ (?)SphinxSunday 17th of February 2019 11:40:37 PMFailed
SEJ (?)SphinxSunday 17th of February 2019 11:39:41 PMFailed
SEJ (?)SphinxFriday 15th of February 2019 02:27:07 PMFailed
SEJ (?)SphinxFriday 15th of February 2019 01:42:35 PMFailed
SEJ (?)SphinxFriday 15th of February 2019 01:39:36 PMFailed
SEJ (?)SphinxFriday 15th of February 2019 01:36:53 PMFailed
SEJ (?)SphinxFriday 15th of February 2019 01:35:40 PMFailed
SEJ (?)SphinxFriday 15th of February 2019 01:34:53 PMDone
SEJ (?)SphinxFriday 15th of February 2019 01:24:15 PMDone
SEJ (?)SphinxFriday 15th of February 2019 01:19:10 PMDone
SEJ (?)SphinxFriday 15th of February 2019 01:17:48 PMDone
SEJ (?)SphinxFriday 15th of February 2019 01:15:37 PMDone
SEJ (?)SphinxFriday 15th of February 2019 01:03:02 PMDone
SEJ (?)SphinxWednesday 6th of February 2019 05:19:15 PMDone
SEJ (?)SphinxMonday 4th of February 2019 08:35:35 AMFailed