Sphinx Loop Prediction

Sphinx Job Submission

NOTICE: There is now a new SAbDab/SAbPred website! After the 29th June, jobs submitted here will no longer be run. Results of previous jobs will still be viewable for one month. To begin using the new version, please go here.

Sphinx is a protein loop modelling algorithm that combines knowledge-based and ab initio approaches. Given a protein structure, location of the loop to be modelled and the sequence of that loop, it searches a database of fragments for sections of other proteins that are shorter than the target loop, but that may have some structural similarity. By using ab initio techniques, the loop conformations can be made to be the correct length. Once a set of conformations has been produced, a fast statistical potential is used to cull the set to only 500 structures, which are then scored using SOAP-Loop (Dong et al., 2013) to produce a ranking.

If you'd rather use the H3-specific Sphinx, please click here.

If you are not sure how to use Sphinx, please look at the submission guidelines here.

If you would like to see what kind of results you can expect, please see here.

If you have not already done so, we recommend first running FREAD, a knowledge-based algorithm which can also produce accurate predictions but requires less computation time. It can be found here.

For a full description of the pipeline, or if you use this software, please refer to:
Marks, Cet al. Sphinx: Merging knowledge-based and ab initio approaches to improve protein loop prediction. Bioinformatics. (2017)

Currently running 1 job(s). Max permitted is 20

Job IDJob typeSubmission timeStatus
SEJ (?)SphinxH3Sunday 14th of July 2019 02:08:44 PMQueued
SEJ (?)SphinxFriday 12th of July 2019 05:45:46 AMQueued
SEJ (?)SphinxH3Tuesday 18th of June 2019 07:07:12 AMQueued
SEJ (?)SphinxTuesday 18th of June 2019 07:05:49 AMQueued
SEJ (?)SphinxH3Friday 14th of June 2019 03:46:53 PMRunning
SEJ (?)SphinxWednesday 12th of June 2019 03:53:28 PMFailed
SEJ (?)SphinxWednesday 12th of June 2019 03:52:57 PMFailed
SEJ (?)SphinxWednesday 12th of June 2019 03:30:24 PMFailed
SEJ (?)SphinxWednesday 12th of June 2019 03:30:01 PMFailed
SEJ (?)SphinxWednesday 12th of June 2019 03:29:30 PMFailed
SEJ (?)SphinxMonday 10th of June 2019 05:51:35 PMDone
SEJ (?)SphinxMonday 10th of June 2019 05:09:51 PMDone
SEJ (?)SphinxMonday 10th of June 2019 05:07:46 PMDone
SEJ (?)SphinxMonday 10th of June 2019 05:04:57 PMDone
SEJ (?)SphinxMonday 10th of June 2019 05:00:36 PMFailed