Sphinx Loop Prediction

Sphinx Job Submission

Sphinx is a protein loop modelling algorithm that combines knowledge-based and ab initio approaches. Given a protein structure, location of the loop to be modelled and the sequence of that loop, it searches a database of fragments for sections of other proteins that are shorter than the target loop, but that may have some structural similarity. By using ab initio techniques, the loop conformations can be made to be the correct length. Once a set of conformations has been produced, a fast statistical potential is used to cull the set to only 500 structures, which are then scored using SOAP-Loop (Dong et al., 2013) to produce a ranking.

If you'd rather use the H3-specific Sphinx, please click here.

If you are not sure how to use Sphinx, please look at the submission guidelines here.

If you would like to see what kind of results you can expect, please see here.

If you have not already done so, we recommend first running FREAD, a knowledge-based algorithm which can also produce accurate predictions but requires less computation time. It can be found here.

For a full description of the pipeline, or if you use this software, please refer to:
Marks, Cet al. Sphinx: Merging knowledge-based and ab initio approaches to improve protein loop prediction. Bioinformatics. (2017)

Currently running 0 job(s). Max permitted is 20

Job IDJob typeSubmission timeStatus
SEJ (?)SphinxFriday 19th of April 2019 12:36:49 PMDone
SEJ (?)SphinxFriday 19th of April 2019 08:08:24 AMFailed
SEJ (?)SphinxFriday 19th of April 2019 12:30:24 AMFailed
SEJ (?)SphinxFriday 19th of April 2019 12:28:26 AMFailed
SEJ (?)SphinxTuesday 16th of April 2019 07:58:17 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:53:17 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:46:21 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:45:00 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:42:22 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:39:43 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:28:28 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:13:43 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:13:36 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 07:05:29 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 06:59:18 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 06:30:07 AMDone
SEJ (?)SphinxTuesday 16th of April 2019 05:52:29 AMDone
SEJ (?)SphinxH3Tuesday 16th of April 2019 05:49:41 AMFailed
SEJ (?)SphinxH3Tuesday 16th of April 2019 05:48:43 AMFailed
SEJ (?)SphinxMonday 15th of April 2019 06:02:43 PMDone
SEJ (?)SphinxH3Monday 15th of April 2019 09:01:52 AMFailed
SEJ (?)SphinxSunday 14th of April 2019 02:57:29 PMDone
SEJ (?)SphinxSunday 14th of April 2019 02:54:47 PMDone
SEJ (?)SphinxSunday 14th of April 2019 02:49:26 PMDone
SEJ (?)SphinxSunday 14th of April 2019 02:28:03 PMDone
SEJ (?)SphinxFriday 12th of April 2019 06:23:22 AMDone
SEJ (?)SphinxFriday 12th of April 2019 05:22:44 AMDone
SEJ (?)SphinxFriday 12th of April 2019 05:17:24 AMDone
SEJ (?)SphinxFriday 12th of April 2019 05:09:58 AMDone
SEJ (?)SphinxFriday 12th of April 2019 05:03:22 AMDone
SEJ (?)SphinxFriday 12th of April 2019 04:55:06 AMDone
SEJ (?)SphinxThursday 11th of April 2019 03:58:16 PMDone
SEJ (?)SphinxThursday 11th of April 2019 03:56:24 PMDone
SEJ (?)SphinxThursday 11th of April 2019 03:54:52 PMDone
SEJ (?)SphinxThursday 11th of April 2019 03:53:02 PMDone
SEJ (?)SphinxThursday 11th of April 2019 03:51:07 PMDone
SEJ (?)SphinxThursday 11th of April 2019 03:49:21 PMDone
SEJ (?)SphinxThursday 11th of April 2019 03:44:16 PMDone
SEJ (?)SphinxThursday 11th of April 2019 03:41:34 PMDone
SEJ (?)SphinxTuesday 2nd of April 2019 05:57:40 PMDone
SEJ (?)SphinxTuesday 2nd of April 2019 02:54:26 PMDone
SEJ (?)SphinxTuesday 2nd of April 2019 02:40:37 PMDone
SEJ (?)SphinxH3Friday 29th of March 2019 01:12:31 AMFailed
SEJ (?)SphinxThursday 28th of March 2019 02:19:28 PMFailed
SEJ (?)SphinxH3Thursday 28th of March 2019 01:16:55 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 10:43:24 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 10:25:46 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 10:23:24 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 10:23:10 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 10:22:19 AMDone
SEJ (?)SphinxWednesday 27th of March 2019 10:22:14 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 10:21:27 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 10:21:23 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 09:42:25 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 09:42:24 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 09:41:55 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 09:39:30 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 09:35:46 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 09:33:17 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 09:32:23 AMFailed
SEJ (?)SphinxWednesday 27th of March 2019 09:32:06 AMFailed
SEJ (?)SphinxTuesday 26th of March 2019 02:10:29 PMFailed
SEJ (?)SphinxTuesday 26th of March 2019 02:09:14 PMFailed
SEJ (?)SphinxMonday 25th of March 2019 06:49:26 AMDone
SEJ (?)SphinxMonday 25th of March 2019 06:27:47 AMDone
SEJ (?)SphinxMonday 25th of March 2019 06:23:39 AMDone
SEJ (?)SphinxMonday 25th of March 2019 06:20:39 AMDone
SEJ (?)SphinxSunday 24th of March 2019 06:55:00 PMFailed
SEJ (?)SphinxSunday 24th of March 2019 06:24:20 PMDone
SEJ (?)SphinxSaturday 23rd of March 2019 11:39:45 PMDone
SEJ (?)SphinxTuesday 19th of March 2019 12:31:38 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:21:07 PMFailed
SEJ (?)SphinxMonday 18th of March 2019 04:19:14 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:19:10 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:19:09 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:19:05 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:18:59 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:18:59 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:18:57 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:18:56 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:18:55 PMDone
SEJ (?)SphinxMonday 18th of March 2019 04:18:52 PMDone
SEJ (?)SphinxMonday 18th of March 2019 12:27:04 PMDone
SEJ (?)SphinxMonday 18th of March 2019 12:23:22 PMFailed
SEJ (?)SphinxMonday 18th of March 2019 07:11:32 AMDone
SEJ (?)SphinxMonday 18th of March 2019 07:04:26 AMDone