Structure summary for 1b88

Detailed entry information.

Details for 1b88

Click on any of the tabs below to see the detailed information about the structure.

Structure visualisation

Display options:
Cartoon model
Spacefill model
Wire model
Ball&stick model
Default colouring
Color by B-factor
Color by chain
Color by sec. structure
Color by element
Spin: on off

Structure information

V-alpha 2.6 Mouse T Cell Receptor (TCR) Domain

ItemInfo
PDB1b88
OrganismMUS MUSCULUS
MethodX-RAY DIFFRACTION
Resolution2.5Å
Number of TCRs2
Paired chains information

This PDB has 2 TCR(s).

A / NA
TCR Details:
ItemInfo
VA chainA
VA IMGT detailsTRAV14/TRAJ38
Speciesmouse
Numbered sequence
Chain typeChain IDFASTA/Annotation fileIMGT numbered sequence (Framework/CDR)
VAA FASTA file
A1 A2 A3 A4 A5 A6 A7 A8
M Q Q V R Q S P
A9 A10 A11 A12 A13 A14 A15 A16
Q S L T V W E G
A17 A18 A19 A20 A21 A22 A23 A24
E T A I L N C S
A25 A26 A27 A28 A29 A36 A37 A38
Y E N S A F D Y
A39 A40 A41 A42 A43 A44 A45 A46
F P W Y Q Q F P
A47 A48 A49 A50 A51 A52 A53 A54
G E G P A L L I
A55 A56 A57 A58 A59 A63 A64 A65
S I L S V S N K
A66 A67 A68 A74 A75 A76 A77 A78
K E D G R F T I
A79 A80 A81 A82 A83 A84 A85 A86
F F N K R E K K
A87 A88 A89 A90 A91 A92 A93 A94
L S L H I A D S
A95 A96 A97 A98 A99 A100 A101 A102
Q P G D S A T Y
A103 A104 A105 A106 A107 A108 A109 A110
F C A A S A S F
A111 A112 A113 A114 A115 A116 A117 A118
G D N S K L I W
A119 A120 A121 A122 A123 A124 A125 A126
G L G T S L V V
A127 A128
N P
CDR Sequences:
LoopSequencePredicted canonical formCDR Length
CDRA3AASASFGDNSKLINone13
CDRA2ILSVSNKNone7
CDRA1NSAFDYNone6

B / NA
TCR Details:
ItemInfo
VA chainB
VA IMGT detailsTRAV14/TRAJ38
Speciesmouse
Numbered sequence
Chain typeChain IDFASTA/Annotation fileIMGT numbered sequence (Framework/CDR)
VAB FASTA file
A1 A2 A3 A4 A5 A6 A7 A8
M Q Q V R Q S P
A9 A10 A11 A12 A13 A14 A15 A16
Q S L T V W E G
A17 A18 A19 A20 A21 A22 A23 A24
E T A I L N C S
A25 A26 A27 A28 A29 A36 A37 A38
Y E N S A F D Y
A39 A40 A41 A42 A43 A44 A45 A46
F P W Y Q Q F P
A47 A48 A49 A50 A51 A52 A53 A54
G E G P A L L I
A55 A56 A57 A58 A59 A63 A64 A65
S I L S V S N K
A66 A67 A68 A74 A75 A76 A77 A78
K E D G R F T I
A79 A80 A81 A82 A83 A84 A85 A86
F F N K R E K K
A87 A88 A89 A90 A91 A92 A93 A94
L S L H I A D S
A95 A96 A97 A98 A99 A100 A101 A102
Q P G D S A T Y
A103 A104 A105 A106 A107 A108 A109 A110
F C A A S A S F
A111 A112 A113 A114 A115 A116 A117 A118
G D N S K L I W
A119 A120 A121 A122 A123 A124 A125 A126
G L G T S L V V
A127 A128
N P
CDR Sequences:
LoopSequencePredicted canonical formCDR Length
CDRA3AASASFGDNSKLINone13
CDRA2ILSVSNKNone7
CDRA1NSAFDYNone6

Available downloads

Additional links and files for download: see help for more details.

ItemLink
IMGT-numbered structureLink
Non-annotated structure from the PDBLink
Summary file for this TCRLink
Link in the PDBLink