Details for 3byt

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Structure information

a complex Between a Variant of Staphylococcal Enterotoxin C3 and the Variable Domain of the Murine T Cell Receptor Beta Chain 8.2

Item	Info
PDB	3byt
Organism	MUS MUSCULUS
Method	X-RAY DIFFRACTION
Resolution	2.3Å
Number of TCRs	4

Paired chains information

This PDB has 4 TCR(s).

A / NA

TCR Details:

Item	Info
VB chain	A
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B2	B3	B4	B5	B6	B7	B8	B9
A	A	V	T	Q	S	P	R
B10	B11	B12	B13	B14	B15	B16	B17
N	K	V	A	V	T	G	E
B18	B19	B20	B21	B22	B23	B24	B25
K	V	T	L	S	C	Q	Q
B26	B27	B28	B29	B37	B38	B39	B40
T	N	N	H	N	N	M	Y
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	R	Q	D	T	G	H
B49	B50	B51	B52	B53	B54	B55	B56
G	L	R	L	I	H	Y	S
B57	B58	B63	B64	B65	B66	B67	B68
Y	G	A	G	S	T	E	K
B69	B70	B71	B72	B74	B75	B76	B77
G	D	I	P	D	G	Y	K
B78	B79	B80	B81	B83	B84	B85	B86
A	S	R	P	S	Q	E	Q
B87	B88	B89	B90	B91	B92	B93	B94
F	S	L	I	L	E	S	A
B95	B96	B97	B98	B99	B100	B101	B102
T	P	S	Q	T	S	V	Y
B103	B104	B105	B106	B107	B108	B109	B114
F	C	A	S	G	G	G	G
B115	B116	B117	B118	B119	B120	B121	B122
T	L	Y	F	G	A	G	T
B123	B124	B125	B126	B127
R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5

C / NA

TCR Details:

Item	Info
VB chain	C
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B2	B3	B4	B5	B6	B7	B8	B9
A	A	V	T	Q	S	P	R
B10	B11	B12	B13	B14	B15	B16	B17
N	K	V	A	V	T	G	E
B18	B19	B20	B21	B22	B23	B24	B25
K	V	T	L	S	C	Q	Q
B26	B27	B28	B29	B37	B38	B39	B40
T	N	N	H	N	N	M	Y
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	R	Q	D	T	G	H
B49	B50	B51	B52	B53	B54	B55	B56
G	L	R	L	I	H	Y	S
B57	B58	B63	B64	B65	B66	B67	B68
Y	G	A	G	S	T	E	K
B69	B70	B71	B72	B74	B75	B76	B77
G	D	I	P	D	G	Y	K
B78	B79	B80	B81	B83	B84	B85	B86
A	S	R	P	S	Q	E	Q
B87	B88	B89	B90	B91	B92	B93	B94
F	S	L	I	L	E	S	A
B95	B96	B97	B98	B99	B100	B101	B102
T	P	S	Q	T	S	V	Y
B103	B104	B105	B106	B107	B108	B109	B114
F	C	A	S	G	G	G	G
B115	B116	B117	B118	B119	B120	B121	B122
T	L	Y	F	G	A	G	T
B123	B124	B125	B126	B127
R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5

E / NA

TCR Details:

Item	Info
VB chain	E
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	B
Antigen Type	Protein
Antigen Organism	STAPHYLOCOCCUS AUREUS
Antigen Sequence	ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNKASTWHGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
Antigen Length	239

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B2	B3	B4	B5	B6	B7	B8	B9
A	A	V	T	Q	S	P	R
B10	B11	B12	B13	B14	B15	B16	B17
N	K	V	A	V	T	G	E
B18	B19	B20	B21	B22	B23	B24	B25
K	V	T	L	S	C	Q	Q
B26	B27	B28	B29	B37	B38	B39	B40
T	N	N	H	N	N	M	Y
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	R	Q	D	T	G	H
B49	B50	B51	B52	B53	B54	B55	B56
G	L	R	L	I	H	Y	S
B57	B58	B63	B64	B65	B66	B67	B68
Y	G	A	G	S	T	E	K
B69	B70	B71	B72	B74	B75	B76	B77
G	D	I	P	D	G	Y	K
B78	B79	B80	B81	B83	B84	B85	B86
A	S	R	P	S	Q	E	Q
B87	B88	B89	B90	B91	B92	B93	B94
F	S	L	I	L	E	S	A
B95	B96	B97	B98	B99	B100	B101	B102
T	P	S	Q	T	S	V	Y
B103	B104	B105	B106	B107	B108	B109	B114
F	C	A	S	G	G	G	G
B115	B116	B117	B118	B119	B120	B121	B122
T	L	Y	F	G	A	G	T
B123	B124	B125	B126	B127
R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5

G / NA

TCR Details:

Item	Info
VB chain	G
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	D
Antigen Type	Protein
Antigen Organism	STAPHYLOCOCCUS AUREUS
Antigen Sequence	ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNKASTWHGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
Antigen Length	239

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B2	B3	B4	B5	B6	B7	B8	B9
A	A	V	T	Q	S	P	R
B10	B11	B12	B13	B14	B15	B16	B17
N	K	V	A	V	T	G	E
B18	B19	B20	B21	B22	B23	B24	B25
K	V	T	L	S	C	Q	Q
B26	B27	B28	B29	B37	B38	B39	B40
T	N	N	H	N	N	M	Y
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	R	Q	D	T	G	H
B49	B50	B51	B52	B53	B54	B55	B56
G	L	R	L	I	H	Y	S
B57	B58	B63	B64	B65	B66	B67	B68
Y	G	A	G	S	T	E	K
B69	B70	B71	B72	B74	B75	B76	B77
G	D	I	P	D	G	Y	K
B78	B79	B80	B81	B83	B84	B85	B86
A	S	R	P	S	Q	E	Q
B87	B88	B89	B90	B91	B92	B93	B94
F	S	L	I	L	E	S	A
B95	B96	B97	B98	B99	B100	B101	B102
T	P	S	Q	T	S	V	Y
B103	B104	B105	B106	B107	B108	B109	B114
F	C	A	S	G	G	G	G
B115	B116	B117	B118	B119	B120	B121	B122
T	L	Y	F	G	A	G	T
B123	B124	B125	B126	B127
R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link