TCR Details:

Item	Info
VB chain	F
VA chain	E
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV13/TRAJ50
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	A
Antigen Type	Hapten
Antigen Organism	MUS MUSCULUS
Antigen name	(11E,14E)-N-[(2S,3S,4R)-1-(ALPHA-D-GLUCOPYRANOSYLOXY)-3,4-DIHYDROXYOCTADECAN-2-YL]ICOSA-11,14-DIENAMIDE
Antigen residue	DB6

MHC details:

Item	Info
MHC Chain	A | B
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	F	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 E A A V T Q S P B9 B10 B11 B12 B13 B14 B15 B16 R S K V A V T G B17 B18 B19 B20 B21 B22 B23 B24 G K V T L S C H B25 B26 B27 B28 B29 B37 B38 B39 Q T N N H D Y M B40 B41 B42 B43 B44 B45 B46 B47 Y W Y R Q D T G B48 B49 B50 B51 B52 B53 B54 B55 H G L R L I H Y B56 B57 B58 B63 B64 B65 B66 B67 S Y V A D S T E B68 B69 B70 B71 B72 B74 B75 B76 K G D I P D G Y B77 B78 B79 B80 B81 B83 B84 B85 K A S R P S Q E B86 B87 B88 B89 B90 B91 B92 B93 N F S L I L E L B94 B95 B96 B97 B98 B99 B100 B101 A S L S Q T A V B102 B103 B104 B105 B106 B107 B108 B109 Y F C A S R L G B113 B114 B115 B116 B117 B118 B119 B120 G Y E Q Y F G P B121 B122 B123 B124 B125 B126 B127 G T R L T V L
VA	E	FASTA file	A1 A2 A3 A4 A5 A6 A7 A8 G Q Q V E Q S P A9 A10 A11 A12 A13 A14 A15 A16 A S L V L Q E G A17 A18 A19 A20 A21 A22 A23 A24 E N A E L Q C T A25 A26 A27 A28 A29 A37 A38 A39 Y S T T L N S M A40 A41 A42 A43 A44 A45 A46 A47 Q W F Y Q R P G A48 A49 A50 A51 A52 A53 A54 A55 G R L V S L L Y A56 A57 A58 A63 A64 A65 A66 A67 S P S W A E Q R A68 A74 A75 A76 A77 A78 A79 A80 G G R L T S S A A81 A82 A83 A84 A85 A86 A87 A88 A S N E S R S S A89 A90 A91 A92 A93 A94 A95 A96 L H I S S S Q I A97 A98 A99 A100 A101 A102 A103 A104 T D S G T Y L C A105 A106 A107 A108 A109 A110 A113 A114 A I A S S S F S A115 A116 A117 A118 A119 A120 A121 A122 K L V F G Q G T A123 A124 A125 A126 A127 A128 S L S V V P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASRLGGYEQY	None	10
CDRB2	SYVADS	None	6
CDRB1	NNHDY	None	5
CDRA3	AIASSSFSKLV	None	11
CDRA2	SPSWAE	None	6
CDRA1	TTLNS	None	5

Orientation and docking angles:

Angle	Value
BC2	100.25°
BC1	75.20°
BA	-49.87°
AC2	86.06°
AC1	119.82°
dc	15.81Å
Docking angle	28.46°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
5men_ED	102.47°	71.74°	-49.32°	86.57°	122.36°	15.97Å	4.9
5fka_BA	103.41°	72.55°	-49.57°	85.03°	124.03°	15.76Å	6.0
7jwj_ED	98.39°	74.68°	-44.94°	86.04°	123.10°	15.83Å	6.2
3vxm_ED	100.10°	73.86°	-49.65°	86.85°	125.85°	16.43Å	6.3
6r2l_ED	100.19°	75.35°	-54.43°	81.77°	120.33°	15.96Å	6.3

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
3mnw_BA	107.15°	71.13°	-53.34°	82.80°	121.51°	16.47Å	9.5

TCR Details:

Item	Info
VB chain	H
VA chain	G
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV13/TRAJ50
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	C
Antigen Type	Hapten
Antigen Organism	MUS MUSCULUS
Antigen name	(11E,14E)-N-[(2S,3S,4R)-1-(ALPHA-D-GLUCOPYRANOSYLOXY)-3,4-DIHYDROXYOCTADECAN-2-YL]ICOSA-11,14-DIENAMIDE
Antigen residue	DB6

MHC details:

Item	Info
MHC Chain	C | D
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	H	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 E A A V T Q S P B9 B10 B11 B12 B13 B14 B15 B16 R S K V A V T G B17 B18 B19 B20 B21 B22 B23 B24 G K V T L S C H B25 B26 B27 B28 B29 B37 B38 B39 Q T N N H D Y M B40 B41 B42 B43 B44 B45 B46 B47 Y W Y R Q D T G B48 B49 B50 B51 B52 B53 B54 B55 H G L R L I H Y B56 B57 B58 B63 B64 B65 B66 B67 S Y V A D S T E B68 B69 B70 B71 B72 B74 B75 B76 K G D I P D G Y B77 B78 B79 B80 B81 B83 B84 B85 K A S R P S Q E B86 B87 B88 B89 B90 B91 B92 B93 N F S L I L E L B94 B95 B96 B97 B98 B99 B100 B101 A S L S Q T A V B102 B103 B104 B105 B106 B107 B108 B109 Y F C A S R L G B113 B114 B115 B116 B117 B118 B119 B120 G Y E Q Y F G P B121 B122 B123 B124 B125 B126 B127 G T R L T V L
VA	G	FASTA file	A1 A2 A3 A4 A5 A6 A7 A8 G Q Q V E Q S P A9 A10 A11 A12 A13 A14 A15 A16 A S L V L Q E G A17 A18 A19 A20 A21 A22 A23 A24 E N A E L Q C T A25 A26 A27 A28 A29 A37 A38 A39 Y S T T L N S M A40 A41 A42 A43 A44 A45 A46 A47 Q W F Y Q R P G A48 A49 A50 A51 A52 A53 A54 A55 G R L V S L L Y A56 A57 A58 A63 A64 A65 A66 A67 S P S W A E Q R A68 A74 A75 A76 A77 A78 A79 A80 G G R L T S S A A81 A82 A83 A84 A85 A86 A87 A88 A S N E S R S S A89 A90 A91 A92 A93 A94 A95 A96 L H I S S S Q I A97 A98 A99 A100 A101 A102 A103 A104 T D S G T Y L C A105 A106 A107 A108 A109 A110 A113 A114 A I A S S S F S A115 A116 A117 A118 A119 A120 A121 A122 K L V F G Q G T A123 A124 A125 A126 A127 A128 S L S V V P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASRLGGYEQY	None	10
CDRB2	SYVADS	None	6
CDRB1	NNHDY	None	5
CDRA3	AIASSSFSKLV	None	11
CDRA2	SPSWAE	None	6
CDRA1	TTLNS	None	5

Orientation and docking angles:

Angle	Value
BC2	100.01°
BC1	75.77°
BA	-48.57°
AC2	84.81°
AC1	118.89°
dc	15.72Å
Docking angle	27.34°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
4mnq_ED	101.72°	75.72°	-46.53°	88.78°	115.36°	15.24Å	6.0
7jwj_ED	98.39°	74.68°	-44.94°	86.04°	123.10°	15.83Å	6.0
5men_ED	102.47°	71.74°	-49.32°	86.57°	122.36°	15.97Å	6.2
1ymm_ED	102.52°	73.47°	-48.86°	81.32°	123.63°	15.82Å	6.8
6r2l_ED	100.19°	75.35°	-54.43°	81.77°	120.33°	15.96Å	6.8

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
5aum_HL	107.30°	70.43°	-45.53°	83.77°	117.71°	16.10Å	9.7