Structure summary for 4wnq

Detailed entry information.

Details for 4wnq

Click on any of the tabs below to see the detailed information about the structure.

Structure visualisation

Display options:
Cartoon model
Spacefill model
Wire model
Ball&stick model
Default colouring
Color by B-factor
Color by chain
Color by sec. structure
Color by element
Spin: on off

Structure information

the Molecular Bases of Delta/alpha-Beta T-Cell Mediated antigen Recognition

Item	Info
PDB	4wnq
Organism	HOMO SAPIENS
Method	X-RAY DIFFRACTION
Resolution	1.8Å
Number of TCRs	2

Paired chains information

This PDB has 2 TCR(s).

B / NA

TCR Details:

Item	Info
VB chain	B
VB IMGT details	TRBV20/TRBJ1
Species	human

Antigen Details:

Item	Info
Antigen Chain	A
Antigen Type	Protein
Antigen Organism	HOMO SAPIENS
Antigen Sequence	HMAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKQLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGVTGKLTFGQGTILTVHPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
Antigen Length	207

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

B

B1	B2	B3	B4	B5	B6	B7	B8
G	A	V	V	S	Q	H	P
B9	B10	B11	B12	B13	B14	B15	B16
S	R	V	I	S	K	S	G
B17	B18	B19	B20	B21	B22	B23	B24
T	S	V	K	I	E	C	R
B25	B26	B27	B28	B29	B36	B37	B38
S	L	D	F	Q	A	T	T
B39	B40	B41	B42	B43	B44	B45	B46
M	F	W	Y	R	Q	F	P
B47	B48	B49	B50	B51	B52	B53	B54
K	Q	S	L	M	L	M	A
B55	B56	B57	B58	B59	B63	B64	B65
T	S	N	E	G	S	K	A
B66	B67	B68	B69	B70	B71	B72	B73
T	Y	E	Q	G	V	E	K
B74	B75	B76	B77	B78	B79	B80	B81
D	K	F	L	I	N	H	A
B83	B84	B85	B86	B87	B88	B89	B90
S	L	T	L	S	T	L	T
B91	B92	B93	B94	B95	B96	B97	B98
V	T	S	A	H	P	E	D
B99	B100	B101	B102	B103	B104	B105	B106
S	S	F	Y	I	C	S	A
B107	B108	B109	B114	B115	B116	B117	B118
P	G	G	V	G	A	F	F
B119	B120	B121	B122	B123	B124	B125	B126
G	Q	G	T	R	L	T	V
B127
V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	SAPGGVGAF	None	9
CDRB2	SNEGSKA	None	7
CDRB1	DFQATT	None	6

D / NA

TCR Details:

Item	Info
VB chain	D
VB IMGT details	TRBV20/TRBJ1
Species	human

Antigen Details:

Item	Info
Antigen Chain	C
Antigen Type	Protein
Antigen Organism	HOMO SAPIENS
Antigen Sequence	HMAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKQLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGVTGKLTFGQGTILTVHPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
Antigen Length	207

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

D

B1	B2	B3	B4	B5	B6	B7	B8
G	A	V	V	S	Q	H	P
B9	B10	B11	B12	B13	B14	B15	B16
S	R	V	I	S	K	S	G
B17	B18	B19	B20	B21	B22	B23	B24
T	S	V	K	I	E	C	R
B25	B26	B27	B28	B29	B36	B37	B38
S	L	D	F	Q	A	T	T
B39	B40	B41	B42	B43	B44	B45	B46
M	F	W	Y	R	Q	F	P
B47	B48	B49	B50	B51	B52	B53	B54
K	Q	S	L	M	L	M	A
B55	B56	B57	B58	B59	B63	B64	B65
T	S	N	E	G	S	K	A
B66	B67	B68	B69	B70	B71	B72	B73
T	Y	E	Q	G	V	E	K
B74	B75	B76	B77	B78	B79	B80	B81
D	K	F	L	I	N	H	A
B83	B84	B85	B86	B87	B88	B89	B90
S	L	T	L	S	T	L	T
B91	B92	B93	B94	B95	B96	B97	B98
V	T	S	A	H	P	E	D
B99	B100	B101	B102	B103	B104	B105	B106
S	S	F	Y	I	C	S	A
B107	B108	B109	B114	B115	B116	B117	B118
P	G	G	V	G	A	F	F
B119	B120	B121	B122	B123	B124	B125	B126
G	Q	G	T	R	L	T	V
B127
V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	SAPGGVGAF	None	9
CDRB2	SNEGSKA	None	7
CDRB1	DFQATT	None	6

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link