Details for 6u3o

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Structure information

Jr51 Dq2-P.aeru-alpha2a complex

Item	Info
PDB	6u3o
Organism	HOMO SAPIENS
Method	X-RAY DIFFRACTION
Resolution	2.743Å
Number of TCRs	2

Paired chains information

This PDB has 2 TCR(s).

B / A

TCR Details:

Item	Info
VB chain	B
VA chain	A
VB IMGT details	TRBV7/TRBJ2
VA IMGT details	TRAV26/TRAJ54
Species	human

Antigen Details:

Item	Info
Antigen Chain	J
Antigen Type	Peptide
Antigen Organism	PSEUDOMONAS AERUGINOSA
Antigen Sequence	AVVQSELPYPEGSGGSIEGR
Antigen Length	20

MHC details:

Item	Info
MHC Chain	C \| D
MHC Type	MH2
MHC Species	human
MHC IMGT details	HLA-DQA10501 / HLA-DQB10201

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B2	B3	B4	B5	B6	B7	B8	B9
M	G	V	S	Q	S	P	S
B10	B11	B12	B13	B14	B15	B16	B17
N	K	V	T	E	K	G	K
B18	B19	B20	B21	B22	B23	B24	B25
D	V	E	L	R	C	D	P
B26	B27	B28	B29	B37	B38	B39	B40
I	S	G	H	T	A	L	Y
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	R	Q	S	L	G	Q
B49	B50	B51	B52	B53	B54	B55	B56
G	L	E	F	L	I	Y	F
B57	B58	B63	B64	B65	B66	B67	B68
Q	G	N	S	A	P	D	K
B69	B70	B71	B72	B73	B74	B75	B76
S	G	L	P	S	D	R	F
B77	B78	B79	B80	B81	B83	B84	B85
S	A	E	R	T	G	G	S
B86	B87	B88	B89	B90	B91	B92	B93
V	S	T	L	T	I	Q	R
B94	B95	B96	B97	B98	B99	B100	B101
T	Q	Q	E	D	S	A	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	L	C	A	S	S	F	R
B110	B111	B112	B113	B114	B115	B116	B117
A	L	A	A	D	T	Q	Y
B118	B119	B120	B121	B122	B123	B124	B125
F	G	P	G	T	R	L	T
B126	B127
V	L

FASTA file

A3	A4	A5	A6	A8	A9	A10	A11
K	T	T	Q	P	P	S	M
A12	A13	A14	A15	A16	A17	A18	A19
D	C	A	E	G	R	A	A
A20	A21	A22	A23	A24	A25	A26	A27
N	L	P	C	N	H	S	T
A28	A29	A30	A36	A37	A38	A39	A40
I	S	G	N	E	Y	V	Y
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	R	Q	I	H	S	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	Y	I	I	H	G
A57	A58	A64	A65	A66	A67	A68	A74
L	K	N	N	E	T	N	E
A75	A76	A77	A78	A79	A80	A81	A82
M	A	S	L	I	I	T	E
A83	A84	A85	A86	A87	A88	A89	A90
D	R	K	S	S	T	L	I
A91	A92	A93	A94	A95	A96	A97	A98
L	P	H	A	T	L	R	D
A99	A100	A101	A102	A103	A104	A105	A106
T	A	V	Y	Y	C	I	A
A107	A108	A109	A113	A114	A115	A116	A117
F	Q	G	A	Q	K	L	V
A118	A119	A120	A121	A122	A123	A124	A125
F	G	Q	G	T	R	L	T
A126	A127	A128
I	N	P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSFRALAADTQY	None	13
CDRB2	FQGNSA	None	6
CDRB1	SGHTA	None	5
CDRA3	IAFQGAQKLV	None	10
CDRA2	GLKNN	None	5
CDRA1	TISGNEY	None	7

Orientation and docking angles:

Angle	Value
BC2	99.94°
BC1	72.47°
BA	-55.86°
AC2	97.29°
AC1	128.96°
dc	17.74Å
Docking angle	47.85°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
4ozf_HG	99.50°	73.08°	-54.73°	99.72°	127.79°	17.90Å	3.0
4ozg_FE	101.51°	72.50°	-54.47°	96.82°	131.35°	17.91Å	3.2
4ozh_HG	101.58°	72.99°	-53.93°	98.19°	131.22°	18.13Å	3.6
4ozh_FE	100.05°	72.88°	-54.01°	99.83°	131.30°	18.21Å	4.0
6xcp_ED	101.92°	73.95°	-59.10°	96.21°	127.51°	17.14Å	4.5

H / G

TCR Details:

Item	Info
VB chain	H
VA chain	G
VB IMGT details	TRBV7/TRBJ2
VA IMGT details	TRAV26/TRAJ54
Species	human

Antigen Details:

Item	Info
Antigen Chain	I
Antigen Type	Peptide
Antigen Organism	PSEUDOMONAS AERUGINOSA
Antigen Sequence	AVVQSELPYPEGSGGSIEGR
Antigen Length	20

MHC details:

Item	Info
MHC Chain	E \| F
MHC Type	MH2
MHC Species	human
MHC IMGT details	HLA-DQA10501 / HLA-DQB10201

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B2	B3	B4	B5	B6	B7	B8	B9
M	G	V	S	Q	S	P	S
B10	B11	B12	B13	B14	B15	B16	B17
N	K	V	T	E	K	G	K
B18	B19	B20	B21	B22	B23	B24	B25
D	V	E	L	R	C	D	P
B26	B27	B28	B29	B37	B38	B39	B40
I	S	G	H	T	A	L	Y
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	R	Q	S	L	G	Q
B49	B50	B51	B52	B53	B54	B55	B56
G	L	E	F	L	I	Y	F
B57	B58	B63	B64	B65	B66	B67	B68
Q	G	N	S	A	P	D	K
B69	B70	B71	B72	B73	B74	B75	B76
S	G	L	P	S	D	R	F
B77	B78	B79	B80	B81	B83	B84	B85
S	A	E	R	T	G	G	S
B86	B87	B88	B89	B90	B91	B92	B93
V	S	T	L	T	I	Q	R
B94	B95	B96	B97	B98	B99	B100	B101
T	Q	Q	E	D	S	A	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	L	C	A	S	S	F	R
B110	B111	B112	B113	B114	B115	B116	B117
A	L	A	A	D	T	Q	Y
B118	B119	B120	B121	B122	B123	B124	B125
F	G	P	G	T	R	L	T
B126	B127
V	L

FASTA file

A3	A4	A5	A6	A8	A9	A10	A11
K	T	T	Q	P	P	S	M
A12	A13	A14	A15	A16	A17	A18	A19
D	C	A	E	G	R	A	A
A20	A21	A22	A23	A24	A25	A26	A27
N	L	P	C	N	H	S	T
A28	A29	A30	A36	A37	A38	A39	A40
I	S	G	N	E	Y	V	Y
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	R	Q	I	H	S	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	Y	I	I	H	G
A57	A58	A64	A65	A66	A67	A68	A74
L	K	N	N	E	T	N	E
A75	A76	A77	A78	A79	A80	A81	A82
M	A	S	L	I	I	T	E
A83	A84	A85	A86	A87	A88	A89	A90
D	R	K	S	S	T	L	I
A91	A92	A93	A94	A95	A96	A97	A98
L	P	H	A	T	L	R	D
A99	A100	A101	A102	A103	A104	A105	A106
T	A	V	Y	Y	C	I	A
A107	A108	A109	A113	A114	A115	A116	A117
F	Q	G	A	Q	K	L	V
A118	A119	A120	A121	A122	A123	A124	A125
F	G	Q	G	T	R	L	T
A126	A127	A128
I	N	P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSFRALAADTQY	None	13
CDRB2	FQGNSA	None	6
CDRB1	SGHTA	None	5
CDRA3	IAFQGAQKLV	None	10
CDRA2	GLKNN	None	5
CDRA1	TISGNEY	None	7

Orientation and docking angles:

Angle	Value
BC2	99.07°
BC1	72.44°
BA	-55.96°
AC2	97.99°
AC1	128.67°
dc	17.75Å
Docking angle	47.51°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
4ozf_HG	99.50°	73.08°	-54.73°	99.72°	127.79°	17.90Å	2.4
4ozh_FE	100.05°	72.88°	-54.01°	99.83°	131.30°	18.21Å	3.9
4ozg_FE	101.51°	72.50°	-54.47°	96.82°	131.35°	17.91Å	4.1
4ozh_HG	101.58°	72.99°	-53.93°	98.19°	131.22°	18.13Å	4.2
6xcp_ED	101.92°	73.95°	-59.10°	96.21°	127.51°	17.14Å	5.0

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link