Details for 2aq1

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Structure information

Crystal Structure of T-Cell Receptor V Beta Domain Variant complexed with Superantigen Sec3 Mutant

Item	Info
PDB	2aq1
Organism	MUS MUSCULUS
Method	X-RAY DIFFRACTION
Resolution	2.1Å
Number of TCRs	4

Paired chains information

This PDB has 4 TCR(s).

A / NA

TCR Details:

Item	Info
VB chain	A
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	Q
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	G	L	R	L	I	H	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	V	G	N	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
E	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
Q	F	S	L	I	L	V	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	S	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	V	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGVGGTLY	None	9
CDRB2	SYGVGN	None	6
CDRB1	NNHNN	None	5

C / NA

TCR Details:

Item	Info
VB chain	C
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	Q
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	G	L	R	L	I	H	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	V	G	N	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
E	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
Q	F	S	L	I	L	V	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	S	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	V	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGVGGTLY	None	9
CDRB2	SYGVGN	None	6
CDRB1	NNHNN	None	5

E / NA

TCR Details:

Item	Info
VB chain	E
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	Q
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	G	L	R	L	I	H	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	V	G	N	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
E	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
Q	F	S	L	I	L	V	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	S	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	V	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGVGGTLY	None	9
CDRB2	SYGVGN	None	6
CDRB1	NNHNN	None	5

G / NA

TCR Details:

Item	Info
VB chain	G
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	Q
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	G	L	R	L	I	H	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	V	G	N	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
E	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
Q	F	S	L	I	L	V	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	S	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	V	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGVGGTLY	None	9
CDRB2	SYGVGN	None	6
CDRB1	NNHNN	None	5

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link