Structure summary for 2ij0

Detailed entry information.

Details for 2ij0

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Structure information

Structural Basis of T Cell Specificity and activation By the Bacterial Superantigen toxic Shock Syndrome toxin-1

Item	Info
PDB	2ij0
Organism	HOMO SAPIENS
Method	X-RAY DIFFRACTION
Resolution	2.25Å
Number of TCRs	2

Paired chains information

This PDB has 2 TCR(s).

C / NA

TCR Details:

Item	Info
VB chain	C
VB IMGT details	TRBV20/TRBJ2
Species	human

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

C

B1	B2	B3	B4	B5	B6	B7	B8
G	A	V	V	S	Q	H	P
B9	B10	B11	B12	B13	B14	B15	B16
S	M	V	I	V	K	S	G
B17	B18	B19	B20	B21	B22	B23	B24
T	S	V	K	I	E	C	R
B25	B26	B27	B28	B29	B36	B37	B38
S	L	D	T	N	I	H	T
B39	B40	B41	B42	B43	B44	B45	B46
M	F	W	Y	R	Q	F	P
B47	B48	B49	B50	B51	B52	B53	B54
K	Q	S	L	M	L	M	A
B55	B56	B57	B58	B59	B63	B64	B65
T	S	H	Q	G	F	N	A
B66	B67	B68	B69	B70	B71	B72	B73
I	Y	E	Q	G	V	V	K
B74	B75	B76	B77	B78	B79	B80	B81
D	K	F	L	I	N	H	A
B83	B84	B85	B86	B87	B88	B89	B90
S	P	T	L	S	T	L	T
B91	B92	B93	B94	B95	B96	B97	B98
V	T	S	A	H	P	E	D
B99	B100	B101	B102	B103	B104	B105	B106
S	G	F	Y	V	C	S	A
B107	B108	B109	B110	B111	B112A	B112	B113
L	A	G	S	G	S	S	T
B114	B115	B116	B117	B118	B119	B120	B121
D	T	Q	Y	F	G	P	G
B122	B123	B124	B125	B126	B127
T	Q	L	T	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	SALAGSGSSTDTQY	None	14
CDRB2	SHQGFNA	None	7
CDRB1	DTNIHT	None	6

E / NA

TCR Details:

Item	Info
VB chain	E
VB IMGT details	TRBV20/TRBJ2
Species	human

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

E

B1	B2	B3	B4	B5	B6	B7	B8
G	A	V	V	S	Q	H	P
B9	B10	B11	B12	B13	B14	B15	B16
S	M	V	I	V	K	S	G
B17	B18	B19	B20	B21	B22	B23	B24
T	S	V	K	I	E	C	R
B25	B26	B27	B28	B29	B36	B37	B38
S	L	D	T	N	I	H	T
B39	B40	B41	B42	B43	B44	B45	B46
M	F	W	Y	R	Q	F	P
B47	B48	B49	B50	B51	B52	B53	B54
K	Q	S	L	M	L	M	A
B55	B56	B57	B58	B59	B63	B64	B65
T	S	H	Q	G	F	N	A
B66	B67	B68	B69	B70	B71	B72	B73
I	Y	E	Q	G	V	V	K
B74	B75	B76	B77	B78	B79	B80	B81
D	K	F	L	I	N	H	A
B83	B84	B85	B86	B87	B88	B89	B90
S	P	T	L	S	T	L	T
B91	B92	B93	B94	B95	B96	B97	B98
V	T	S	A	H	P	E	D
B99	B100	B101	B102	B103	B104	B105	B106
S	G	F	Y	V	C	S	A
B107	B108	B109	B110	B111	B112A	B112	B113
L	A	G	S	G	S	S	T
B114	B115	B116	B117	B118	B119	B120	B121
D	T	Q	Y	F	G	P	G
B122	B123	B124	B125	B126	B127
T	Q	L	T	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	SALAGSGSSTDTQY	None	14
CDRB2	SHQGFNA	None	7
CDRB1	DTNIHT	None	6

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link