Structure summary for 3axl

Detailed entry information.

Details for 3axl

Click on any of the tabs below to see the detailed information about the structure.

Structure visualisation

Display options:
Cartoon model
Spacefill model
Wire model
Ball&stick model
Default colouring
Color by B-factor
Color by chain
Color by sec. structure
Color by element
Spin: on off

Structure information

Murine Valpha 10 Vbeta 8.1 T-Cell Receptor

Item	Info
PDB	3axl
Organism	MUS MUSCULUS
Method	X-RAY DIFFRACTION
Resolution	2.9Å
Number of TCRs	2

Paired chains information

This PDB has 2 TCR(s).

B / A

TCR Details:

Item	Info
VB chain	B
VA chain	A
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV13/TRAJ50
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

B

B3	B4	B5	B6	B7	B8	B9	B10
A	V	T	Q	S	P	R	S
B11	B12	B13	B14	B15	B16	B17	B18
K	V	A	V	T	G	G	K
B19	B20	B21	B22	B23	B24	B25	B26
V	T	L	S	C	H	Q	T
B27	B28	B29	B37	B38	B39	B40	B41
N	N	H	D	Y	M	Y	W
B42	B43	B44	B45	B46	B47	B48	B49
Y	R	Q	D	T	G	H	G
B50	B51	B52	B53	B54	B55	B56	B57
L	R	L	I	H	Y	S	Y
B58	B63	B64	B65	B66	B67	B68	B69
V	A	D	S	T	E	K	G
B70	B71	B72	B74	B75	B76	B77	B78
D	I	P	D	G	Y	K	A
B79	B80	B81	B83	B84	B85	B86	B87
S	R	P	S	Q	E	N	F
B88	B89	B90	B91	B92	B93	B94	B95
S	L	I	L	E	L	A	S
B96	B97	B98	B99	B100	B101	B102	B103
L	S	Q	T	A	V	Y	F
B104	B105	B106	B107	B108	B109	B113	B114
C	A	S	R	L	G	G	Y
B115	B116	B117	B118	B119	B120	B121	B122
E	Q	Y	F	G	P	G	T
B123	B124	B125	B126	B127
R	L	T	V	L

VA

A

A3	A4	A5	A6	A7	A8	A9	A10
Q	V	E	Q	S	P	A	S
A11	A12	A13	A14	A15	A16	A17	A18
L	V	L	Q	E	G	E	N
A19	A20	A21	A22	A23	A24	A25	A26
A	E	L	Q	C	T	Y	S
A27	A28	A29	A37	A38	A39	A40	A41
T	T	L	N	S	M	Q	W
A42	A43	A44	A45	A46	A47	A48	A49
F	Y	Q	R	P	G	G	R
A50	A51	A52	A53	A54	A55	A56	A57
L	V	S	L	L	Y	S	P
A58	A63	A64	A65	A66	A67	A68	A74
S	W	A	E	Q	R	G	G
A75	A76	A77	A78	A79	A80	A81	A82
R	L	T	S	S	A	A	S
A83	A84	A85	A86	A87	A88	A89	A90
N	E	S	R	S	S	L	H
A91	A92	A93	A94	A95	A96	A97	A98
I	S	S	S	Q	I	T	D
A99	A100	A101	A102	A103	A104	A105	A106
S	G	T	Y	L	C	A	I
A107	A108	A109	A110	A113	A114	A115	A116
A	S	S	S	F	S	K	L
A117	A118	A119	A120	A121	A122	A123	A124
V	F	G	Q	G	T	S	L
A125	A126	A127	A128
S	V	V	P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASRLGGYEQY	None	10
CDRB2	SYVADS	None	6
CDRB1	NNHDY	None	5
CDRA3	AIASSSFSKLV	None	11
CDRA2	SPSWAE	None	6
CDRA1	TTLNS	None	5

Orientation and docking angles:

Angle	Value
BC2	99.15°
BC1	70.16°
BA	-47.82°
AC2	88.22°
AC1	124.38°
dc	17.25Å

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
2bnq_ED	99.08°	70.19°	-46.99°	87.94°	123.48°	17.00Å	1.3
2bnr_ED	99.46°	70.52°	-47.45°	87.20°	123.24°	16.92Å	1.7
2f54_ED	98.01°	69.94°	-45.79°	89.54°	123.82°	17.23Å	2.7
2f53_ED	98.66°	70.55°	-45.38°	89.09°	123.08°	17.05Å	3.0
2pye_ED	99.75°	70.55°	-44.88°	88.10°	123.21°	17.40Å	3.2

H / G

TCR Details:

Item	Info
VB chain	H
VA chain	G
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV13/TRAJ50
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

H

B3	B4	B5	B6	B7	B8	B9	B10
A	V	T	Q	S	P	R	S
B11	B12	B13	B14	B15	B16	B17	B18
K	V	A	V	T	G	G	K
B19	B20	B21	B22	B23	B24	B25	B26
V	T	L	S	C	H	Q	T
B27	B28	B29	B37	B38	B39	B40	B41
N	N	H	D	Y	M	Y	W
B42	B43	B44	B45	B46	B47	B48	B49
Y	R	Q	D	T	G	H	G
B50	B51	B52	B53	B54	B55	B56	B57
L	R	L	I	H	Y	S	Y
B58	B63	B64	B65	B66	B67	B68	B69
V	A	D	S	T	E	K	G
B70	B71	B72	B74	B75	B76	B77	B78
D	I	P	D	G	Y	K	A
B79	B80	B81	B83	B84	B85	B86	B87
S	R	P	S	Q	E	N	F
B88	B89	B90	B91	B92	B93	B94	B95
S	L	I	L	E	L	A	S
B96	B97	B98	B99	B100	B101	B102	B103
L	S	Q	T	A	V	Y	F
B104	B105	B106	B107	B108	B109	B113	B114
C	A	S	R	L	G	G	Y
B115	B116	B117	B118	B119	B120	B121	B122
E	Q	Y	F	G	P	G	T
B123	B124	B125	B126	B127
R	L	T	V	L

VA

G

A3	A4	A5	A6	A7	A8	A9	A10
Q	V	E	Q	S	P	A	S
A11	A12	A13	A14	A15	A16	A17	A18
L	V	L	Q	E	G	E	N
A19	A20	A21	A22	A23	A24	A25	A26
A	E	L	Q	C	T	Y	S
A27	A28	A29	A37	A38	A39	A40	A41
T	T	L	N	S	M	Q	W
A42	A43	A44	A45	A46	A47	A48	A49
F	Y	Q	R	P	G	G	R
A50	A51	A52	A53	A54	A55	A56	A57
L	V	S	L	L	Y	S	P
A58	A63	A64	A65	A66	A67	A68	A74
S	W	A	E	Q	R	G	G
A75	A76	A77	A78	A79	A80	A81	A82
R	L	T	S	S	A	A	S
A83	A84	A85	A86	A87	A88	A89	A90
N	E	S	R	S	S	L	H
A91	A92	A93	A94	A95	A96	A97	A98
I	S	S	S	Q	I	T	D
A99	A100	A101	A102	A103	A104	A105	A106
S	G	T	Y	L	C	A	I
A107	A108	A109	A110	A113	A114	A115	A116
A	S	S	S	F	S	K	L
A117	A118	A119	A120	A121	A122	A123	A124
V	F	G	Q	G	T	S	L
A125	A126	A127	A128
S	V	V	P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASRLGGYEQY	None	10
CDRB2	SYVADS	None	6
CDRB1	NNHDY	None	5
CDRA3	AIASSSFSKLV	None	11
CDRA2	SPSWAE	None	6
CDRA1	TTLNS	None	5

Orientation and docking angles:

Angle	Value
BC2	99.51°
BC1	70.17°
BA	-48.53°
AC2	88.24°
AC1	124.46°
dc	17.11Å

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
2bnq_ED	99.08°	70.19°	-46.99°	87.94°	123.48°	17.00Å	1.9
2bnr_ED	99.46°	70.52°	-47.45°	87.20°	123.24°	16.92Å	2.0
2f54_LK	97.77°	70.00°	-49.95°	86.54°	123.25°	16.87Å	3.1
2f54_ED	98.01°	69.94°	-45.79°	89.54°	123.82°	17.23Å	3.5
5brz_ED	101.38°	70.91°	-46.16°	86.76°	123.99°	16.21Å	3.6

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link