TCR Details:

Item	Info
VB chain	D
VA chain	C
VB IMGT details	TRBV19/TRBJ1
VA IMGT details	TRAV11/TRAJ18
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	A
Antigen Type	Hapten
Antigen Organism	MUS MUSCULUS
Antigen name	2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE
Antigen residue	PII

MHC details:

Item	Info
MHC Chain	A | B
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	D	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 G G I I T Q T P B9 B10 B11 B12 B13 B14 B15 B16 K F L I G Q E G B17 B18 B19 B20 B21 B22 B23 B24 Q K L T L K C Q B25 B26 B27 B28 B29 B37 B38 B39 Q N F N H D T M B40 B41 B42 B43 B44 B45 B46 B47 Y W Y R Q D S G B48 B49 B50 B51 B52 B53 B54 B55 K G L R L I Y Y B56 B57 B58 B63 B64 B65 B66 B67 S Y G A G S T E B68 B69 B70 B71 B72 B74 B75 B76 K G D L S E G Y B77 B78 B79 B80 B81 B83 B84 B85 D A S R E K K S B86 B87 B88 B89 B90 B91 B92 B93 S F S L T V T S B94 B95 B96 B97 B98 B99 B100 B101 A Q K N E M A V B102 B103 B104 B105 B106 B107 B108 B109 F L C A S G S L B110 B112 B113 B114 B115 B116 B117 B118 L D V R E V F F B119 B120 B121 B122 B123 B124 B125 B126 G K G T R L T V B127 V
VA	C	FASTA file	A2 A3 A4 A5 A6 A7 A8 A9 T Q V E Q S P Q A10 A11 A12 A13 A14 A15 A16 A17 S L V V R Q G E A18 A19 A20 A21 A22 A23 A24 A25 N S V L Q C N Y A26 A27 A28 A29 A36 A37 A38 A39 S V T P D N H L A40 A41 A42 A43 A44 A45 A46 A47 R W F K Q D T G A48 A49 A50 A51 A52 A53 A54 A55 K G L V S L T V A56 A57 A58 A59 A63 A64 A65 A66 L V D Q K D K T A67 A68 A74 A75 A76 A77 A78 A79 S N G R Y S A T A80 A81 A82 A83 A84 A85 A86 A87 L D K D A K H S A88 A89 A90 A91 A92 A93 A94 A95 T L H I T A T L A96 A97 A98 A99 A100 A101 A102 A103 L D D T A T Y I A104 A105 A106 A107 A108 A109 A110 A111 C V V G D R G S A112 A113 A114 A115 A116 A117 A118 A119 A L G R L H F G A120 A121 A122 A123 A124 A125 A126 A127 A G T Q L I V I A128 P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGSLLDVREVF	None	12
CDRB2	SYGAGS	None	6
CDRB1	FNHDT	None	5
CDRA3	VVGDRGSALGRLH	None	13
CDRA2	LVDQKDK	A2-7-C	7
CDRA1	VTPDNH	None	6

Orientation and docking angles:

Angle	Value
BC2	99.90°
BC1	74.94°
BA	-62.35°
AC2	78.66°
AC1	125.25°
dc	16.15Å
Docking angle	23.90°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
4apq_DC	99.83°	75.05°	-62.12°	78.50°	125.21°	16.18Å	0.3
3sda_DC	99.72°	74.86°	-61.98°	79.10°	125.45°	16.20Å	0.6
3sdd_DC	99.94°	75.45°	-61.84°	78.72°	125.61°	16.12Å	0.8
3sdc_DC	99.60°	74.90°	-62.92°	78.10°	125.67°	16.07Å	1.0
3scm_DC	99.29°	74.65°	-62.93°	77.74°	125.73°	16.19Å	1.4