TCR Details:

Item	Info
VB chain	D
VA chain	C
VB IMGT details	TRBV3/TRBJ2
VA IMGT details	TRAV7/TRAJ26
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	A | I
Antigen Type	Unknown
Antigen Organism	MUS MUSCULUS
Antigen name	(15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE; N-ACETYL-D-GLUCOSAMINE
Antigen residue	CIS | NAG

MHC details:

Item	Info
MHC Chain	A | B
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	D	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 G P K V L Q I P B9 B10 B11 B12 B13 B14 B15 B16 S H Q I I D M G B17 B18 B19 B20 B21 B22 B23 B24 Q M V T L N C D B25 B26 B27 B28 B29 B37 B38 B39 P V S N H L Y F B40 B41 B42 B43 B44 B45 B46 B47 Y W Y K Q I L G B48 B49 B50 B51 B52 B53 B54 B55 Q Q M E F L V N B56 B57 B58 B63 B64 B65 B66 B67 F Y N G K V M E B68 B69 B70 B71 B72 B73 B74 B75 K S K L F K D Q B76 B77 B78 B79 B80 B81 B83 B84 F S V E R P D G B85 B86 B87 B88 B89 B90 B91 B92 S Y F T L K I Q B93 B94 B95 B96 B97 B98 B99 B100 P T A L E D S A B101 B102 B103 B104 B105 B106 B107 B108 V Y F C A S S F B109 B110 B112 B113 B114 B115 B116 B117 W G A Y A E Q F B118 B119 B120 B121 B122 B123 B124 B125 F G P G T R L T B126 B127 V L
VA	C	FASTA file	A1 A2 A3 A4 A5 A6 A7 A8 Q Q K V Q Q S P A9 A10 A11 A12 A13 A14 A15 A16 E S L S V P E G A17 A18 A19 A20 A21 A22 A23 A24 G M A S L N C T A25 A26 A27 A28 A29 A36 A37 A38 S S D R N F Q Y A39 A40 A41 A42 A43 A44 A45 A46 F W W Y R Q H S A47 A48 A49 A50 A51 A52 A53 A54 G E G P K A L M A55 A56 A57 A58 A63 A64 A65 A66 S I F S D G D K A67 A68 A74 A75 A76 A77 A78 A79 K E G R F T A H A80 A81 A82 A83 A84 A85 A86 A87 L N K A S L H V A88 A89 A90 A91 A92 A93 A94 A95 S L H I R D S Q A96 A97 A98 A99 A100 A101 A102 A103 P S D S A L Y F A104 A105 A106 A107 A108 A109 A110 A111 C A A S E Q N N A112 A113 A114 A115 A116 A117 A118 A119 Y A Q G L T F G A120 A121 A122 A123 A124 A125 A126 A127 L G T R V S V F A128 P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSFWGAYAEQF	None	12
CDRB2	FYNGKV	None	6
CDRB1	SNHLY	None	5
CDRA3	AASEQNNYAQGLT	None	13
CDRA2	IFSDGD	None	6
CDRA1	DRNFQY	None	6

Orientation and docking angles:

Angle	Value
BC2	107.74°
BC1	72.25°
BA	-65.83°
AC2	82.73°
AC1	124.47°
dc	16.93Å
Docking angle	73.81°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
8vz8_DC	105.58°	71.75°	-65.27°	80.76°	124.60°	16.54Å	3.0
4elk_BA	105.77°	71.69°	-67.56°	81.33°	124.76°	16.38Å	3.1
7t2b_ED	108.07°	71.08°	-64.40°	80.15°	124.66°	16.67Å	3.2
8i5d_BA	105.56°	71.73°	-65.25°	81.36°	126.32°	16.74Å	3.3
8vz9_DC	106.18°	72.14°	-63.32°	81.74°	125.40°	16.62Å	3.3

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
4dcq_BA	108.30°	73.42°	-64.76°	82.94°	120.98°	16.23Å	3.9
3s96_AB	107.61°	73.57°	-66.51°	82.70°	120.78°	16.43Å	4.0
1nmc_HL	110.09°	71.80°	-64.06°	80.19°	120.88°	16.16Å	5.4
5te6_HL	110.27°	71.02°	-62.37°	82.91°	121.25°	16.49Å	5.5
1ghf_HL	110.63°	71.68°	-61.52°	81.98°	122.12°	16.05Å	5.8

TCR Details:

Item	Info
VB chain	H
VA chain	G
VB IMGT details	TRBV3/TRBJ2
VA IMGT details	TRAV7/TRAJ26
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	E | K
Antigen Type	Unknown
Antigen Organism	MUS MUSCULUS
Antigen name	(15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE; N-ACETYL-D-GLUCOSAMINE
Antigen residue	CIS | NAG

MHC details:

Item	Info
MHC Chain	E | F
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	H	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 G P K V L Q I P B9 B10 B11 B12 B13 B14 B15 B16 S H Q I I D M G B17 B18 B19 B20 B21 B22 B23 B24 Q M V T L N C D B25 B26 B27 B28 B29 B37 B38 B39 P V S N H L Y F B40 B41 B42 B43 B44 B45 B46 B47 Y W Y K Q I L G B48 B49 B50 B51 B52 B53 B54 B55 Q Q M E F L V N B56 B57 B58 B63 B64 B65 B66 B67 F Y N G K V M E B68 B69 B70 B71 B72 B73 B74 B75 K S K L F K D Q B76 B77 B78 B79 B80 B81 B83 B84 F S V E R P D G B85 B86 B87 B88 B89 B90 B91 B92 S Y F T L K I Q B93 B94 B95 B96 B97 B98 B99 B100 P T A L E D S A B101 B102 B103 B104 B105 B106 B107 B108 V Y F C A S S F B109 B110 B112 B113 B114 B115 B116 B117 W G A Y A E Q F B118 B119 B120 B121 B122 B123 B124 B125 F G P G T R L T B126 B127 V L
VA	G	FASTA file	A1 A2 A3 A4 A5 A6 A7 A8 Q Q K V Q Q S P A9 A10 A11 A12 A13 A14 A15 A16 E S L S V P E G A17 A18 A19 A20 A21 A22 A23 A24 G M A S L N C T A25 A26 A27 A28 A29 A36 A37 A38 S S D R N F Q Y A39 A40 A41 A42 A43 A44 A45 A46 F W W Y R Q H S A47 A48 A49 A50 A51 A52 A53 A54 G E G P K A L M A55 A56 A57 A58 A63 A64 A65 A66 S I F S D G D K A67 A68 A74 A75 A76 A77 A78 A79 K E G R F T A H A80 A81 A82 A83 A84 A85 A86 A87 L N K A S L H V A88 A89 A90 A91 A92 A93 A94 A95 S L H I R D S Q A96 A97 A98 A99 A100 A101 A102 A103 P S D S A L Y F A104 A105 A106 A107 A108 A109 A110 A111 C A A S E Q N N A112 A113 A114 A115 A116 A117 A118 A119 Y A Q G L T F G A120 A121 A122 A123 A124 A125 A126 A127 L G T R V S V F A128 P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSFWGAYAEQF	None	12
CDRB2	FYNGKV	None	6
CDRB1	SNHLY	None	5
CDRA3	AASEQNNYAQGLT	None	13
CDRA2	IFSDGD	None	6
CDRA1	DRNFQY	None	6

Orientation and docking angles:

Angle	Value
BC2	108.40°
BC1	72.98°
BA	-66.66°
AC2	80.45°
AC1	123.55°
dc	16.65Å
Docking angle	73.58°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
7t2b_TS	107.92°	71.65°	-66.21°	79.15°	123.48°	16.50Å	2.0
7t2b_ED	108.07°	71.08°	-64.40°	80.15°	124.66°	16.67Å	3.2
4elk_BA	105.77°	71.69°	-67.56°	81.33°	124.76°	16.38Å	3.4
2nw2_BA	105.62°	72.42°	-66.59°	78.59°	124.81°	16.89Å	3.6
8vz8_DC	105.58°	71.75°	-65.27°	80.76°	124.60°	16.54Å	3.6

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
3s96_AB	107.61°	73.57°	-66.51°	82.70°	120.78°	16.43Å	3.7
4dcq_BA	108.30°	73.42°	-64.76°	82.94°	120.98°	16.23Å	4.1
1nmc_HL	110.09°	71.80°	-64.06°	80.19°	120.88°	16.16Å	4.3
3wii_IM	112.33°	71.31°	-64.39°	80.48°	121.86°	15.64Å	5.2
1ncc_HL	112.49°	72.25°	-63.92°	81.37°	121.51°	16.38Å	5.5