TCR Details:

Item	Info
VB chain	F
VA chain	E
VB IMGT details	TRBV3/TRBJ2
VA IMGT details	TRAV7/TRAJ26
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	C
Antigen Type	Hapten
Antigen Organism	MUS MUSCULUS
Antigen name	(2S,3R,4E)-2-AMINO-3-HYDROXYOCTADEC-4-EN-1-YL 3-O-SULFO-BETA-D-GALACTOPYRANOSIDE
Antigen residue	SGF

MHC details:

Item	Info
MHC Chain	C | D
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	F	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 G P K V L Q I P B9 B10 B11 B12 B13 B14 B15 B16 S H Q I I D M G B17 B18 B19 B20 B21 B22 B23 B24 Q M V T L N C D B25 B26 B27 B28 B29 B37 B38 B39 P V S N H L Y F B40 B41 B42 B43 B44 B45 B46 B47 Y W Y K Q I L G B48 B49 B50 B51 B52 B53 B54 B55 Q Q M E F L V N B56 B57 B58 B63 B64 B65 B66 B67 F Y N G K V M E B68 B69 B70 B71 B72 B73 B74 B75 K S K L F K D Q B76 B77 B78 B79 B80 B81 B83 B84 F S V E R P D G B85 B86 B87 B88 B89 B90 B91 B92 S Y F T L K I Q B93 B94 B95 B96 B97 B98 B99 B100 P T A L E D S A B101 B102 B103 B104 B105 B106 B107 B108 V Y F C A S S F B109 B110 B112 B113 B114 B115 B116 B117 W G A Y A E Q F B118 B119 B120 B121 B122 B123 B124 B125 F G P G T R L T B126 B127 V L
VA	E	FASTA file	A1 A2 A3 A4 A5 A6 A7 A8 Q Q K V Q Q S P A9 A10 A11 A12 A13 A14 A15 A16 E S L S V P E G A17 A18 A19 A20 A21 A22 A23 A24 G M A S L N C T A25 A26 A27 A28 A29 A36 A37 A38 S S D R N F Q Y A39 A40 A41 A42 A43 A44 A45 A46 F W W Y R Q H S A47 A48 A49 A50 A51 A52 A53 A54 G E G P K A L M A55 A56 A57 A58 A63 A64 A65 A66 S I F S D G D K A67 A68 A74 A75 A76 A77 A78 A79 K E G R F T A H A80 A81 A82 A83 A84 A85 A86 A87 L N K A S L H V A88 A89 A90 A91 A92 A93 A94 A95 S L H I R D S Q A96 A97 A98 A99 A100 A101 A102 A103 P S D S A L Y F A104 A105 A106 A107 A108 A109 A110 A111 C A A S E Q N N A112 A113 A114 A115 A116 A117 A118 A119 Y A Q G L T F G A120 A121 A122 A123 A124 A125 A126 A127 L G T R V S V F A128 P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSFWGAYAEQF	None	12
CDRB2	FYNGKV	None	6
CDRB1	SNHLY	None	5
CDRA3	AASEQNNYAQGLT	None	13
CDRA2	IFSDGD	None	6
CDRA1	DRNFQY	None	6

Orientation and docking angles:

Angle	Value
BC2	108.59°
BC1	71.49°
BA	-62.61°
AC2	82.96°
AC1	126.38°
dc	16.99Å
Docking angle	72.83°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
3tf7_Cc	107.14°	72.79°	-61.91°	82.16°	126.70°	16.64Å	2.3
3tf7_Gg	109.58°	71.38°	-62.20°	80.68°	127.04°	16.81Å	2.6
2nx5_PN	108.96°	72.02°	-62.01°	80.86°	124.76°	16.37Å	2.9
8vz9_DC	106.18°	72.14°	-63.32°	81.74°	125.40°	16.62Å	3.1
2nx5_UT	108.15°	71.49°	-60.47°	80.39°	125.18°	16.73Å	3.6

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
1ghf_HL	110.63°	71.68°	-61.52°	81.98°	122.12°	16.05Å	5.0
5te6_HL	110.27°	71.02°	-62.37°	82.91°	121.25°	16.49Å	5.4
1a4j_BA	111.30°	72.70°	-61.42°	83.26°	121.98°	16.50Å	5.5
3rpi_AB	111.40°	72.07°	-59.66°	84.25°	122.88°	16.71Å	5.6
3w14_PQ	112.54°	71.65°	-60.45°	80.80°	123.36°	16.03Å	5.9

TCR Details:

Item	Info
VB chain	H
VA chain	G
VB IMGT details	TRBV3/TRBJ2
VA IMGT details	TRAV7/TRAJ26
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	A
Antigen Type	Hapten
Antigen Organism	MUS MUSCULUS
Antigen name	(2S,3R,4E)-2-AMINO-3-HYDROXYOCTADEC-4-EN-1-YL 3-O-SULFO-BETA-D-GALACTOPYRANOSIDE
Antigen residue	SGF

MHC details:

Item	Info
MHC Chain	A | B
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	H	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 G P K V L Q I P B9 B10 B11 B12 B13 B14 B15 B16 S H Q I I D M G B17 B18 B19 B20 B21 B22 B23 B24 Q M V T L N C D B25 B26 B27 B28 B29 B37 B38 B39 P V S N H L Y F B40 B41 B42 B43 B44 B45 B46 B47 Y W Y K Q I L G B48 B49 B50 B51 B52 B53 B54 B55 Q Q M E F L V N B56 B57 B58 B63 B64 B65 B66 B67 F Y N G K V M E B68 B69 B70 B71 B72 B73 B74 B75 K S K L F K D Q B76 B77 B78 B79 B80 B81 B83 B84 F S V E R P D G B85 B86 B87 B88 B89 B90 B91 B92 S Y F T L K I Q B93 B94 B95 B96 B97 B98 B99 B100 P T A L E D S A B101 B102 B103 B104 B105 B106 B107 B108 V Y F C A S S F B109 B110 B112 B113 B114 B115 B116 B117 W G A Y A E Q F B118 B119 B120 B121 B122 B123 B124 B125 F G P G T R L T B126 B127 V L
VA	G	FASTA file	A1 A2 A3 A4 A5 A6 A7 A8 Q Q K V Q Q S P A9 A10 A11 A12 A13 A14 A15 A16 E S L S V P E G A17 A18 A19 A20 A21 A22 A23 A24 G M A S L N C T A25 A26 A27 A28 A29 A36 A37 A38 S S D R N F Q Y A39 A40 A41 A42 A43 A44 A45 A46 F W W Y R Q H S A47 A48 A49 A50 A51 A52 A53 A54 G E G P K A L M A55 A56 A57 A58 A63 A64 A65 A66 S I F S D G D K A67 A68 A74 A75 A76 A77 A78 A79 K E G R F T A H A80 A81 A82 A83 A84 A85 A86 A87 L N K A S L H V A88 A89 A90 A91 A92 A93 A94 A95 S L H I R D S Q A96 A97 A98 A99 A100 A101 A102 A103 P S D S A L Y F A104 A105 A106 A107 A108 A109 A110 A111 C A A S E Q N N A112 A113 A114 A115 A116 A117 A118 A119 Y A Q G L T F G A120 A121 A122 A123 A124 A125 A126 A127 L G T R V S V F A128 P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSFWGAYAEQF	None	12
CDRB2	FYNGKV	None	6
CDRB1	SNHLY	None	5
CDRA3	AASEQNNYAQGLT	None	13
CDRA2	IFSDGD	None	6
CDRA1	DRNFQY	None	6

Orientation and docking angles:

Angle	Value
BC2	108.26°
BC1	71.40°
BA	-61.17°
AC2	85.19°
AC1	127.00°
dc	17.28Å
Docking angle	72.20°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
3tf7_Cc	107.14°	72.79°	-61.91°	82.16°	126.70°	16.64Å	3.7
7su9_ED	106.07°	73.06°	-58.87°	84.52°	128.92°	16.85Å	4.1
5wki_ED	105.92°	71.26°	-58.68°	85.56°	129.52°	17.34Å	4.3
6ulr_ED	105.96°	73.47°	-58.86°	84.49°	128.86°	16.82Å	4.4
1kgc_ED	109.35°	71.85°	-63.15°	86.71°	130.57°	17.26Å	4.5

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
3rpi_AB	111.40°	72.07°	-59.66°	84.25°	122.88°	16.71Å	5.5
4hfu_HL	112.36°	71.78°	-58.26°	83.56°	125.23°	16.51Å	5.6
2w65_AB	112.61°	73.10°	-59.37°	85.00°	123.28°	16.61Å	6.3
1a4j_BA	111.30°	72.70°	-61.42°	83.26°	121.98°	16.50Å	6.4
1ghf_HL	110.63°	71.68°	-61.52°	81.98°	122.12°	16.05Å	6.4