Structure summary for 5wjo

Detailed entry information.

Details for 5wjo

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Structure information

Crystal Structure of the Unliganded Pg90 TCR

Item	Info
PDB	5wjo
Organism	HOMO SAPIENS
Method	X-RAY DIFFRACTION
Resolution	2.5Å
Number of TCRs	2

Paired chains information

This PDB has 2 TCR(s).

B / A

TCR Details:

Item	Info
VB chain	B
VA chain	A
VB IMGT details	TRBV7/TRBJ2
VA IMGT details	TRAV26/TRAJ13
Species	human

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

B

B1	B2	B3	B4	B5	B6	B7	B8
G	A	G	V	S	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	Y	K	V	A	K	R	G
B17	B18	B19	B20	B21	B22	B23	B24
Q	D	V	A	L	R	C	D
B25	B26	B27	B28	B29	B37	B38	B39
P	I	S	G	H	V	S	L
B40	B41	B42	B43	B44	B45	B46	B47
F	W	Y	Q	Q	A	L	G
B48	B49	B50	B51	B52	B53	B54	B55
Q	G	P	E	F	L	T	Y
B56	B57	B58	B63	B64	B65	B66	B67
F	Q	N	E	A	Q	L	D
B68	B69	B70	B71	B72	B73	B74	B75
K	S	G	L	P	S	D	R
B76	B77	B78	B79	B80	B81	B83	B84
F	F	A	E	R	P	E	G
B85	B86	B87	B88	B89	B90	B91	B92
S	V	S	T	L	K	I	Q
B93	B94	B95	B96	B97	B98	B99	B100
R	T	Q	Q	E	D	S	A
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	L	C	A	S	S	L
B109	B110	B111	B111A	B111B	B112B	B112A	B112
A	R	A	Q	G	A	S	N
B113	B114	B115	B116	B117	B118	B119	B120
T	G	E	L	F	F	G	E
B121	B122	B123	B124	B125	B126	B127
G	S	R	L	T	V	L

VA

A

A1	A2	A3	A4	A5	A6	A8	A9
D	A	K	T	T	Q	P	P
A10	A11	A12	A13	A14	A15	A16	A17
S	M	D	C	A	E	G	R
A18	A19	A20	A21	A22	A23	A24	A25
A	A	N	L	P	C	N	H
A26	A27	A28	A29	A30	A36	A37	A38
S	T	I	S	G	N	E	Y
A39	A40	A41	A42	A43	A44	A45	A46
V	Y	W	Y	R	Q	I	H
A47	A48	A49	A50	A51	A52	A53	A54
S	Q	G	P	Q	Y	I	I
A55	A56	A57	A58	A64	A65	A66	A67
H	G	L	K	N	N	E	T
A68	A74	A75	A76	A77	A78	A79	A80
N	E	M	A	S	L	I	I
A81	A82	A83	A84	A85	A86	A87	A88
T	E	D	R	K	S	S	T
A89	A90	A91	A92	A93	A94	A95	A96
L	I	L	P	H	A	T	L
A97	A98	A99	A100	A101	A102	A103	A104
R	D	T	A	V	Y	Y	C
A105	A106	A107	A108	A109	A110	A113	A114
I	V	R	V	A	Y	R	Q
A115	A116	A117	A118	A119	A120	A121	A122
K	V	T	F	G	T	G	T
A123	A124	A125	A126	A127	A128
K	L	Q	V	I	P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSLARAQGASNTGELF	None	17
CDRB2	FQNEAQ	None	6
CDRB1	SGHVS	None	5
CDRA3	IVRVAYRQKVT	None	11
CDRA2	GLKNN	None	5
CDRA1	TISGNEY	None	7

Orientation and docking angles:

Angle	Value
BC2	103.73°
BC1	72.38°
BA	-59.28°
AC2	86.74°
AC1	131.09°
dc	17.19Å

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
7n5c_ED	105.57°	71.00°	-59.85°	87.94°	130.75°	17.78Å	2.7
5wki_ED	105.92°	71.26°	-58.68°	85.56°	129.52°	17.34Å	3.2
6uln_ED	105.42°	73.24°	-58.64°	84.32°	129.08°	16.84Å	3.7
7su9_ED	106.07°	73.06°	-58.87°	84.52°	128.92°	16.85Å	4.0
6ulr_ED	105.96°	73.47°	-58.86°	84.49°	128.86°	16.82Å	4.1

D / C

TCR Details:

Item	Info
VB chain	D
VA chain	C
VB IMGT details	TRBV7/TRBJ2
VA IMGT details	TRAV26/TRAJ13
Species	human

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

D

B1	B2	B3	B4	B5	B6	B7	B8
G	A	G	V	S	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	Y	K	V	A	K	R	G
B17	B18	B19	B20	B21	B22	B23	B24
Q	D	V	A	L	R	C	D
B25	B26	B27	B28	B29	B37	B38	B39
P	I	S	G	H	V	S	L
B40	B41	B42	B43	B44	B45	B46	B47
F	W	Y	Q	Q	A	L	G
B48	B49	B50	B51	B52	B53	B54	B55
Q	G	P	E	F	L	T	Y
B56	B57	B58	B63	B64	B65	B66	B67
F	Q	N	E	A	Q	L	D
B68	B69	B70	B71	B72	B73	B74	B75
K	S	G	L	P	S	D	R
B76	B77	B78	B79	B80	B81	B83	B84
F	F	A	E	R	P	E	G
B85	B86	B87	B88	B89	B90	B91	B92
S	V	S	T	L	K	I	Q
B93	B94	B95	B96	B97	B98	B99	B100
R	T	Q	Q	E	D	S	A
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	L	C	A	S	S	L
B109	B110	B111	B111A	B111B	B112B	B112A	B112
A	R	A	Q	G	A	S	N
B113	B114	B115	B116	B117	B118	B119	B120
T	G	E	L	F	F	G	E
B121	B122	B123	B124	B125	B126	B127
G	S	R	L	T	V	L

VA

C

A1	A2	A3	A4	A5	A6	A8	A9
D	A	K	T	T	Q	P	P
A10	A11	A12	A13	A14	A15	A16	A17
S	M	D	C	A	E	G	R
A18	A19	A20	A21	A22	A23	A24	A25
A	A	N	L	P	C	N	H
A26	A27	A28	A29	A30	A36	A37	A38
S	T	I	S	G	N	E	Y
A39	A40	A41	A42	A43	A44	A45	A46
V	Y	W	Y	R	Q	I	H
A47	A48	A49	A50	A51	A52	A53	A54
S	Q	G	P	Q	Y	I	I
A55	A56	A57	A58	A64	A65	A66	A67
H	G	L	K	N	N	E	T
A68	A74	A75	A76	A77	A78	A79	A80
N	E	M	A	S	L	I	I
A81	A82	A83	A84	A85	A86	A87	A88
T	E	D	R	K	S	S	T
A89	A90	A91	A92	A93	A94	A95	A96
L	I	L	P	H	A	T	L
A97	A98	A99	A100	A101	A102	A103	A104
R	D	T	A	V	Y	Y	C
A105	A106	A107	A108	A109	A110	A113	A114
I	V	R	V	A	Y	R	Q
A115	A116	A117	A118	A119	A120	A121	A122
K	V	T	F	G	T	G	T
A123	A124	A125	A126	A127	A128
K	L	Q	V	I	P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSLARAQGASNTGELF	None	17
CDRB2	FQNEAQ	None	6
CDRB1	SGHVS	None	5
CDRA3	IVRVAYRQKVT	None	11
CDRA2	GLKNN	None	5
CDRA1	TISGNEY	None	7

Orientation and docking angles:

Angle	Value
BC2	103.40°
BC1	72.46°
BA	-60.21°
AC2	85.89°
AC1	131.23°
dc	17.15Å

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
7n5c_ED	105.57°	71.00°	-59.85°	87.94°	130.75°	17.78Å	3.4
5wki_ED	105.92°	71.26°	-58.68°	85.56°	129.52°	17.34Å	3.6
6uln_ED	105.42°	73.24°	-58.64°	84.32°	129.08°	16.84Å	3.8
2po6_DC	100.88°	70.51°	-60.85°	85.02°	129.17°	17.22Å	3.9
6ulr_ED	105.96°	73.47°	-58.86°	84.49°	128.86°	16.82Å	4.1

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link