Structure summary for 5xov

Detailed entry information.

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Details for 5xov

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Structure information

Crystal Structure of Peptide-HLA-A24 Bound to S19-2 V-Delta/V-Beta TCR

ItemInfo
PDB5xov
OrganismHOMO SAPIENS
MethodX-RAY DIFFRACTION
Resolution2.684Å
Number of TCRs2
Paired chains information

This PDB has 2 TCR(s).

H / NA
TCR Details:
ItemInfo
VB chainH
VB IMGT detailsTRBV30/TRBJ1
Specieshuman
Antigen Details:
ItemInfo
Antigen ChainG | F
Antigen TypeProtein
Antigen Organismhomo sapiens ; human immunodeficiency virus 1
Antigen SequenceRYPLTFGWCF/QKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKQLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGELARSGGYQKVTFGTGTKLQVIPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSP
Antigen Length218
MHC details:
ItemInfo
MHC ChainD | E
MHC TypeMH1
MHC Specieshuman
MHC IMGT detailsHLA-A*2402
Numbered sequence
Chain typeChain IDFASTA/Annotation fileIMGT numbered sequence (Framework/CDR)
VBH FASTA file
B1 B2 B3 B4 B5 B6 B7 B8
S Q T I H Q W P
B9 B10 B11 B12 B13 B14 B15 B16
A T L V Q P V G
B17 B18 B19 B20 B21 B22 B23 B24
S P L S L E C T
B25 B26 B27 B28 B29 B36 B37 B38
V E G T S N P N
B39 B40 B41 B42 B43 B44 B45 B46
L Y W Y R Q A A
B47 B48 B49 B50 B51 B52 B53 B54
G R G L Q L L F
B55 B56 B57 B58 B64 B65 B66 B67
Y S V G I G Q I
B68 B69 B70 B71 B72 B74 B75 B76
S S E V P Q N L
B77 B78 B79 B80 B81 B83 B84 B85
S A S R P Q D R
B86 B87 B88 B89 B90 B91 B92 B93
Q F I L S S K K
B94 B95 B96 B97 B98 B99 B100 B101
L L L S D S G F
B102 B103 B104 B105 B106 B107 B108 B109
Y L C A W S V S
B110 B111 B112A B112 B113 B114 B115 B116
V G A G V P T I
B117 B118 B119 B120 B121 B122 B123 B124
Y F G E G S W L
B125 B126 B127
T V V
CDR Sequences:
LoopSequencePredicted canonical formCDR Length
CDRB3AWSVSVGAGVPTIYNone14
CDRB2SVGIGNone5
CDRB1GTSNPNNone6

J / NA
TCR Details:
ItemInfo
VB chainJ
VB IMGT detailsTRBV30/TRBJ1
Specieshuman
Antigen Details:
ItemInfo
Antigen ChainI | C
Antigen TypeProtein
Antigen Organismhomo sapiens ; human immunodeficiency virus 1
Antigen SequenceRYPLTFGWCF/QKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKQLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGELARSGGYQKVTFGTGTKLQVIPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSP
Antigen Length218
MHC details:
ItemInfo
MHC ChainA | B
MHC TypeMH1
MHC Specieshuman
MHC IMGT detailsHLA-A*2402
Numbered sequence
Chain typeChain IDFASTA/Annotation fileIMGT numbered sequence (Framework/CDR)
VBJ FASTA file
B1 B2 B3 B4 B5 B6 B7 B8
S Q T I H Q W P
B9 B10 B11 B12 B13 B14 B15 B16
A T L V Q P V G
B17 B18 B19 B20 B21 B22 B23 B24
S P L S L E C T
B25 B26 B27 B28 B29 B36 B37 B38
V E G T S N P N
B39 B40 B41 B42 B43 B44 B45 B46
L Y W Y R Q A A
B47 B48 B49 B50 B51 B52 B53 B54
G R G L Q L L F
B55 B56 B57 B58 B64 B65 B66 B67
Y S V G I G Q I
B68 B69 B70 B71 B72 B74 B75 B76
S S E V P Q N L
B77 B78 B79 B80 B81 B83 B84 B85
S A S R P Q D R
B86 B87 B88 B89 B90 B91 B92 B93
Q F I L S S K K
B94 B95 B96 B97 B98 B99 B100 B101
L L L S D S G F
B102 B103 B104 B105 B106 B107 B108 B109
Y L C A W S V S
B110 B111 B112A B112 B113 B114 B115 B116
V G A G V P T I
B117 B118 B119 B120 B121 B122 B123 B124
Y F G E G S W L
B125 B126 B127
T V V
CDR Sequences:
LoopSequencePredicted canonical formCDR Length
CDRB3AWSVSVGAGVPTIYNone14
CDRB2SVGIGNone5
CDRB1GTSNPNNone6

Available downloads

Additional links and files for download: see help for more details.

ItemLink
IMGT-numbered structureLink
Non-annotated structure from the PDBLink
Summary file for this TCRLink
Link in the PDBLink