Job Results

Job ID: example_job

Finished: 01/01/2024 00:00:00

PDB heavy chain ID: H

PDB light chain ID: L


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>   Output Sequences

The tables below compare the original heavy and light CDR sequences from the input structure with the AntiFold output sequences (Seq N). Differing residues are highlighted in red.

In the sequence logo plots, the letter height and opacity correspond to the AntiFold log-likelihoods (0-100%) per residue in the output sequences.


Heavy Sequence: H chain

CDR1 CDR2 CDR3

27282930313536373856575859636465105106107108109110112113114115116117
OriginalGYSISSGYYIYHSGSTAGLTQSSHNDAN

Seq 1GASITSSYYIYYSGTTAGLYGSPWSNPA
Seq 2GASISSSYYIYYSGSTAGLYGRWWSNPY
Seq 3GASITSSYYIYYSGSTAGLFYSPYSNPY
Seq 4GASITSSYYIYYSGSTAGLYGSPWSNPY
Seq 5GASITSSYYIYYSGSTAGLYGRYTSNPA
Seq 6GASITSSYYIYYSGSTAGLYGTPWSNPY
Seq 7GASITSSYYIYYSGSTAGLYGTWSSNPY
Seq 8GASITSSYYIYYSGSTAGLYYRAWSNPA
Seq 9GASITSSYYIYYSGSTAGLYGRVWSNPY
Seq 10GASITSSYYIYYSGSTAGLYGSYWSNAS
Seq 11GASITSSYYIYYSGSTAGLYYRWWSNPY
Seq 12GASISSSYYIYYSGSTAGLYYSYWSTPY
Seq 13GASITSSYYIYYSGSTAGLYGSAWSNPY
Seq 14GDSITSSYYIYYSGSTAGLYYSAWSNPS
Seq 15GASITSSYYIYYSGSTAGLYTSIWSNPY
Seq 16GASITSSYWIYYSGSTAGRYGSPYSNPY
Seq 17GASITSSYYIYYSGSTAGLYTSWWSNPY
Seq 18GASISSSYYIYYSGSTAGLYGSAWSNPY
Seq 19GASITSSYYIYYSGSTAGLYGSAWSNPY
Seq 20GASITSSYYIYYSGSTAGLYGTYWSNPY

Light Sequence: L chain

CDR1 CDR2 CDR3

2728293035363738565765105106107108109113114115116117
OriginalSSNIGNNYDNNGTWDSSLNPV

Seq 1SSNIGNNYDNNGTWDSRSNWV
Seq 2SSNIGNNYDNNGTWDSSLNAV
Seq 3SSNIGNNYDNNGTWDSRLNPV
Seq 4SSNIGNNYDDNGTWDSRSNAV
Seq 5SSNIGNNYDDNGTWDSRLSAV
Seq 6SSNIGNNYDDNGTWDSSLNPV
Seq 7SSNIGNNYDNNGTWDSRSNPV
Seq 8SSNIGNNYDNNGTWDSRSNAV
Seq 9SSNIGNNYDNNGTWDSRSNWV
Seq 10SSNIGNNYDDNGTWDSRLNWV
Seq 11SSNIGNNYDNNGTWDSRLNAV
Seq 12SSNIGNNYDDNGTWDSRLNWV
Seq 13SSNIGNNYDDNGTWDSRLNAV
Seq 14SSNIGNNYDNNGTWDSRSNPV
Seq 15SSNIGNNYDDNGTWDSSSNPV
Seq 16SSNIGNNYDNNGTWDSRLNAV
Seq 17SSNIGNNYDNNGTWDSSLNPV
Seq 18SSNIGNNYDNNGTWDSRRSPV
Seq 19SSNIGNNYDNNGTWDSRLNAV
Seq 20SSNIGNNYDNNGTWDSRSNAV
>   Downloads
AntiFold generated sequences (FASTA) Download
AntiFold predicted log-likelihoods (CSV) Download
Perplexity-annotated structure (PDB) Download
Job log file (Troubleshooting) Download
All downloads (ZIP) Download

Magnus Haraldson Høie & Alissa Hummer et al. “AntiFold:
Improved antibody structure-based design using inverse folding” 2024. [ link]

Download BibTex Reference

Header image credit: David Goodsell