L1 D

L2 I

L3 V

L4 L

L5 T

L6 Q

L7 S

L8 P

L9 A

L10 S

L11 L

L12 S

L13 A

L14 S

L15 V

L16 G

L17 E

L18 T

L19 V

L20 T

L21 I

L22 T

L23 C

L24 R

L25 A

L26 S

L27 G

L28 N

L29 I

L30 H

L31 N

L32 Y

L33 L

L34 A

L35 W

L36 Y

L37 Q

L38 Q

L39 K

L40 Q

L41 G

L42 K

L43 S

L44 P

L45 Q

L46 L

L47 L

L48 V

L49 Y

L50 Y

L51 T

L52 T

L53 T

L54 L

L55 A

L56 D

L57 G

L58 V

L59 P

L60 S

L61 R

L62 F

L63 S

L64 G

L65 S

L66 G

L67 S

L68 G

L69 T

L70 Q

L71 Y

L72 S

L73 L

L74 K

L75 I

L76 N

L77 S

L78 L

L79 Q

L80 P

L81 E

L82 D

L83 F

L84 G

L85 S

L86 Y

L87 Y

L88 C

L89 Q

L90 H

L91 F

L92 W

L93 S

L94 T

L95 P

L96 R

L97 T

L98 F

L99 G

L100 G

L101 G

L102 T

L103 K

L104 L

L105 E

L106 I

L107 K

L108 -

L109 -

L110 -

L111 -

H1 Q

H2 V

H3 Q

H4 L

H5 Q

H6 E

H7 S

H8 G

H9 P

H10 G

H11 L

H12 V

H13 A

H14 P

H15 S

H16 Q

H17 S

H18 L

H19 S

H20 I

H21 T

H22 C

H23 T

H24 V

H25 S

H26 G

H27 F

H28 S

H29 L

H30 T

H31 G

H32 Y

H33 G

H34 V

H35 N

H36 W

H37 V

H38 R

H39 Q

H40 P

H41 P

H42 G

H43 K

H44 G

H45 L

H46 E

H47 W

H48 L

H49 G

H50 M

H51 I

H52 W

H53 G

H54 D

H55 G

H56 N

H57 T

H58 D

H59 Y

H60 N

H61 S

H62 A

H63 L

H64 K

H65 S

H66 R

H67 L

H68 S

H69 I

H70 S

H71 K

H72 D

H73 N

H74 S

H75 K

H76 S

H77 Q

H78 V

H79 F

H80 L

H81 K

H82 M

H82A N

H82B S

H82C L

H83 H

H84 T

H85 D

H86 D

H87 T

H88 A

H89 R

H90 Y

H91 Y

H92 C

H93 A

H94 R

H95 E

H96 R

H97 D

H98 Y

H99 R

H100 L

H101 D

H102 Y

H103 W

H104 G

H105 Q

H106 G

H107 T

H108 T

H109 L

H110 T

H111 V

H112 S

H113 S

The CDRs were determined using the  chothia  definition.
 The results can be found in  /tmp/tmpM6TcLJ
Running EpiPred with:
Depth: 3
Neighbor width: 4.5
Paratope size: 34
1/129
Score: 27544.411116986164
2/129
Score: 16209.177359162413
3/129
4/129
Score: 19063.934222694683
5/129
Score: 30238.774238224316
6/129
Score: 20881.182507568727
7/129
Score: 31566.049021498195
8/129
9/129
10/129
Score: 23393.99816293086
11/129
Score: 27863.028123972104
12/129
13/129
Score: 39633.302156595615
14/129
Score: 22979.604693462672
15/129
Score: 28357.993583651307
16/129
17/129
Score: 26292.639251831715
18/129
Score: 29041.928218042704
19/129
Score: 28993.955036311338
20/129
Score: 16143.369682494851
21/129
Score: 24139.987363065793
22/129
Score: 30854.237229676462
23/129
Score: 21397.19480520818
24/129
Score: 40390.79254331418
25/129
Score: 37813.455124848486
26/129
Score: 37813.455124848486
27/129
28/129
29/129
30/129
31/129
32/129
Score: 26484.361046643502
33/129
Score: 21737.376830689165
34/129
35/129
Score: 29416.935462105725
36/129
Score: 26156.09309902831
37/129
Score: 28651.429336032295
38/129
39/129
Score: 26113.853076384574
40/129
Score: 37349.79181388423
41/129
Score: 23849.823455137433
42/129
43/129
Score: 29603.080032767015
44/129
Score: 20098.20711113492
45/129
Score: 12778.210211373193
46/129
Score: 13549.628658042786
47/129
Score: 18565.579528531463
48/129
Score: 30940.623830956996
49/129
50/129
Score: 20389.576554296887
51/129
Score: 16116.773145764806
52/129
53/129
54/129
Score: 34235.890242250665
55/129
Score: 32130.086731762356
56/129
Score: 23053.612259474896
57/129
58/129
59/129
60/129
Score: 26179.284224115047
61/129
Score: 26179.284224115047
62/129
Score: 21916.231581089774
63/129
64/129
Score: 26328.20005294722
65/129
66/129
Score: 20421.41694370032
67/129
Score: 16403.4956545555
68/129
69/129
Score: 24914.009424364696
70/129
Score: 29490.615553119875
71/129
Score: 20435.766022854707
72/129
73/129
Score: 19645.827483492107
74/129
Score: 24538.795474808292
75/129
Score: 18728.6157426431
76/129
Score: 19072.081127364418
77/129
Score: 19966.827874676328
78/129
Score: 26271.95653131482
79/129
Score: 24795.239690299048
80/129
Score: 21848.02791894853
81/129
Score: 30426.07680041812
82/129
Score: 20179.708250661988
83/129
Score: 30866.29706649627
84/129
Score: 15943.321721530805
85/129
86/129
87/129
Score: 27907.719194855697
88/129
Score: 23293.389881644933
89/129
90/129
91/129
92/129
Score: 16538.735330314903
93/129
94/129
95/129
Score: 16866.461774081497
96/129
Score: 12412.106498922856
97/129
Score: 17445.413474504116
98/129
Score: 19234.826822581817
99/129
Score: 14617.91739768483
100/129
101/129
102/129
Score: 30539.356662313083
103/129
Score: 26988.189567272984
104/129
Score: 17965.243452137154
105/129
106/129
107/129
Score: 12531.176097587351
108/129
Score: 16146.86145619211
109/129
Score: 16146.861456192106
110/129
Score: 17445.413474504116
111/129
112/129
Score: 24293.28992872805
113/129
Score: 17172.635889499015
114/129
Score: 7899.983482830005
115/129
Score: 11931.389305401295
116/129
117/129
Score: 15861.927569548814
118/129
Score: 8600.373071601163
119/129
Score: 8600.373071601165
120/129
121/129
Score: 12098.554448137478
122/129
Score: 24170.967608667102
123/129
Score: 46111.51287614562
124/129
Score: 37583.24748031986
125/129
Score: 24195.61807693995
126/129
Score: 24195.61807693995
127/129
Score: 38007.25980195466
128/129
Score: 16437.211657954307
129/129
Score: 8184.742818570126
It appears that your percentage cutoff is too high given the number of epitopes you would like to get out of this program - please increase the percentage cutoff or decrease the number of returned epitopes
Removing all the temp files, almost done...
