N9 Neuraminidase complexes with antibodies Nc41 and Nc10: Empirical Free-Energy Calculations Capture Specificity Trends Observed with Mutant Binding Data
| PDB | 1nma |
| Species | MUS MUSCULUS |
| Method | X-RAY DIFFRACTION |
| Resolution | 3.0Å |
| Number of Fvs | 1 |
| In complex | True |
| Light chain type | Kappa |
| Has constant region | False |
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Display options: |
This PDB has 1 Fv(s).
| Fv Details | |
|---|---|
| Heavy chain | H |
| Light chain | L |
| Heavy subgroup | IGHV1 |
| Light subgroup | IGKV10 |
| Species | MUS MUSCULUS |
| In complex? | True |
| scFv? | False |
| Has constant domain? | False |
| Numbered Sequences (chothia) |
|---|
Heavy chain
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Light chain
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| Antigen Details | |
|---|---|
| Antigen chains | N |
| Antigen type | protein |
| Antigen name | n9 neuraminidase |
| Antigen species | INFLUENZA A VIRUS |
| Antigen sequence | REFNNLTKGLCTINSWHIYGKDNAVRIGEDSDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRDLISWPLSSPPTVYNSRVECIGWSSTSCHDGRARMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCQNGVCPVVFTDGSATGPAETRIYYFKEGKILKWEPLTGTAKHIEECSCYGEQAGVTCTCRDNWQGSNRPVIQIDPVAMTHTSQYICSPVLTDNPRPNDPTVGKCNDPYPGNNNNGVKGFSYLDGGNTWLGRTISIASRSGYEMLKVPNALTDDKSRPTQGQTIVLNTDWSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWNWPDGAKIEYFL |
| CDR Sequences (chothia definition) | |
|---|---|
| CDRH1 | GYTFTNY |
| CDRH2 | YPGNGD |
| CDRH3 | SGGSYRYDGGFDY |
| CDRL1 | RASQDISNYLN |
| CDRL2 | YTSNLHS |
| CDRL3 | QQDFTLPFT |
| Orientation Angles (from ABangle) | |
|---|---|
| HL | -61.03° |
| HC1 | 72.48° |
| HC2 | 109.88° |
| LC1 | 120.29° |
| LC2 | 81.63° |
| dc | 16.4Å |
Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]
SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]
Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]
