Structure Viewer: 4lsr

>   Structure details

Crystal Structure of Broadly and Potently Neutralizing antibody Vrc-Ch31 in complex with Hiv-1 Clade a/E Stran 93Th057 Gp120 with Loop D and Loop V5 From Clade a Strain Ker_2018_11

PDB4lsr
SpeciesHOMO SAPIENS
MethodX-RAY DIFFRACTION
Resolution2.28Å
Number of Fvs1
In complexTrue
Light chain typeKappa
Has constant regionTrue
>   Structure visualisation
Please note the WebGL plugin needs to be enabled to use PV Viewer.

Display options:














>   Fv information

This PDB has 1 Fv(s).

>   H/L
Fv Details
Heavy chainH
Light chainL
Heavy subgroupunknown
Light subgroupIGKV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 24A 24B 24C 24D 24E 24F 25 26 27 28 29 30 31 31A 31B 31C 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L V Q S G A A V R K P G A S V T V S C K F A E D D D Y S P Y W V N P A P E H F I H F L R Q A P G Q Q L E W L A W M N P T N G A V N Y A W Y L N G R V T A T R D R S M T T A F L E V K S L R S D D T A V Y Y C A R A Q K R G R S E W A Y A H W G Q G T P V V V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 97 98 99 100 101 102 103 104 105 106 107
D I Q M T Q S P S S L S A S L G D R V T I T C Q A S R G I G K D L N W Y Q Q K A G K A P K L L V S D A S T L E G G V P S R F S G S G F H Q D F S L T I S S L Q A E D V A T Y F C Q Q Y E T F G Q G T K V D I K

Antigen Details
Antigen chainsG
Antigen typeprotein
Antigen nameenvelope glycoprotein gp120 with loop d and v5 from strainker_2018_11
Antigen speciesHUMAN IMMUNODEFICIENCY VIRUS 1
Antigen sequenceVWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENISDNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGNTGNNSRTNETFRPGGGNIKDNWRSELYKYKVVQIE

CDR Sequences (chothia definition)
CDRH1PYWVNPAPEH
CDRH2NPTNGA
CDRH3AQKRGRSEWAYAH
CDRL1QASRGIGKDLN
CDRL2DASTLEG
CDRL3QQYET

Orientation Angles (from ABangle)
HL-56.52°
HC172.2°
HC2114.87°
LC1122.96°
LC287.04°
dc16.54Å
>   Downloads

Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

Our privacy policy