Structure Viewer: 5eor

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Structure of the Murine antibody Fab 8E3 Bound to the Vaccinia Virus a27 Peptide 101-110

PDB5eor
SpeciesMUS MUSCULUS
MethodX-RAY DIFFRACTION
Resolution2.27Å
Number of Fvs1
In complexTrue
Light chain typeLambda
Has constant regionTrue
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>   Fv information

This PDB has 1 Fv(s).

>   H/L
Fv Details
Heavy chainH
Light chainL
Heavy subgroupIGHV2
Light subgroupIGLV3
SpeciesMUS MUSCULUS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 101 102 103 104 105 106 107 108 109 110 111 112
Q V Q L K Q S G P G L V Q P S Q S L S I T C T V S G L S L T S Y G V H W V R Q S P G K G L E W L G V I W S G G N T D Y N A A F I S R L S I S K D N S K N Q V F F K M N S L R A D D T A I Y Y C A I Y Y R Y G A Y W G Q G T L V T V S

Light chain

1 2 3 4 5 6 7 8 9 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 54A 54B 54C 54D 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 95A 95B 95C 95D 96 97 98 99 100 101 102 103 104 105 106 107
Q L V L T Q S S S A S F S L G A S A K L T C T L S S Q H S T Y T I D W Y Q Q Q P L K P P K Y V M E L R R D G S H N T G D G I P D R F S G S S S G A D R Y L S I S N I Q P E D E A I Y I C G V G D T I K E Q F V Y V F G G G T K V T V L

Antigen Details
Antigen chainsA
Antigen typepeptide
Antigen nameprotein a27
Antigen speciesVACCINIA VIRUS
Antigen sequenceDVQTGRRPYE

CDR Sequences (chothia definition)
CDRH1GLSLTSY
CDRH2WSGGN
CDRH3YYRYGAY
CDRL1TLSSQHSTYTID
CDRL2LRRDGSHNTGD
CDRL3GVGDTIKEQFVYV

Orientation Angles (from ABangle)
HL-53.3°
HC172.88°
HC2119.27°
LC1121.3°
LC287.39°
dc16.68Å
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Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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