Structure Viewer: 5eul

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Structure of the Seca-Secy complex with a Translocating Polypeptide Substrate

PDB5eul
SpeciesVICUGNA PACOS
MethodX-RAY DIFFRACTION
Resolution3.7Å
Number of Fvs1
In complexTrue
Light chain type
Has constant regionFalse
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>   Fv information

This PDB has 1 Fv(s).

>   V/-
Fv Details
Heavy chainV
Light chain
Heavy subgroupIGHV1
Light subgroup
SpeciesVICUGNA PACOS
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 101 102 103 104 105 106 107 108 109 110 111 112 113
V Q L V E T G G G L V Q P G G S L R L S C G A S G S I F N M Y A M G W Y R Q A P G K Q R E V V A R I A T D D S T M Y P D S V K G R F T I S R D N A K N T V Y L Q M N S L K P E D T A V Y Y C Y Y Q R T V M S Q P Y W G Q G T Q V T V S S

Antigen Details
Antigen chainsY,E
Antigen typeprotein
Antigen nameprotein translocase subunit secy; preprotein translocase sece subunit
Antigen speciesGEOBACILLUS THERMODENITRIFICANS (STRAIN NG80-2)
Antigen sequenceMQRVTNFFKEVVRELKKVSWPNRKELVNYTAVVLATVAFFTVFFAVIDLGISQLIRLVFEGGHHHHHHHH/MFRTISNFMRVSDIRNKIIFTLLMLIVFRIGTFIPVPSVNTDVLKLQDQLNAFGVLNIFCGGALQNFSIFAMGVMPYITASIIVQLLQMDVVPKFAEWSKQGEMGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLAGGMLIQNPGIGTYLLIAVVLTAGTAFLMWLGEQITAKGVGNGISIIIFAGIVSGIPTILNQIYAQTFGGLNIVRLLLVALAVVAVIVGVIYIQQAFRKIPIQYAKRLEGRNPVGGHSTHLPLKVNPAGVIPVIFAVSFLIAPPTIASFFGTNDVTLWIRRTFDYTHPVGMTIYVVLIIAFTYFYAFVQVNPEQMADNLKKQGGYIPGIRPGKNTQEYVTRILYRLTLVGSLFLAFIAVLPVFFVNFANLPPSAQIGGTSLLIVVGVALETMKQLESQLVKRHYRGFIK

CDR Sequences (chothia definition)
CDRH1GSIFNMY
CDRH2ATDDS
CDRH3QRTVMSQPY

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Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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