Structure Viewer: 5mje

>   Structure details

Crystal Structure of the Higb2 toxin in complex with Nb8

PDB5mje
SpeciesLAMA GLAMA
MethodX-RAY DIFFRACTION
Resolution2.599Å
Number of Fvs1
In complexTrue
Light chain type
Has constant regionFalse
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>   Fv information

This PDB has 1 Fv(s).

>   B/-
Fv Details
Heavy chainB
Light chain
Heavy subgroupIGHV1
Light subgroup
SpeciesLAMA GLAMA
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 73A 73B 73C 73D 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L Q E S G G G L V Q P G G S L R L S C V V S G D R R T I Y T M G W F R Q A P G N Q G E L V A T M T S S G V T T Y V D S V K G R F S I S R D S A E D S A K N T V S L Q M N S L K P E D T A F Y T C Y E E S R R P L G S R N T Y W G Q G T Q V T V S S

Antigen Details
Antigen chainsA
Antigen typeprotein
Antigen namecytotoxic translational repressor of toxin-antitoxinstability system
Antigen speciesVIBRIO CHOLERAE
Antigen sequenceGSSHHHHHHSSGLVPRGSHMKSVFVESTIFEKYRDEYLSDEEYRLFQAELMLNPKLGDVIQGTGGLRKIRVASKGKGKRGGSRIIYYFLDEKRRFYLLTIYGKNEMSDLNANQRKQLMAFMEAWRNEQS

CDR Sequences (chothia definition)
CDRH1GDRRTIY
CDRH2TSSGV
CDRH3ESRRPLGSRNTY

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Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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