Structure Viewer: 7c88

>   Structure details

complex Structure of Js003 and Pd-L1

PDB7c88
SpeciesMUS MUSCULUS
MethodX-RAY DIFFRACTION
Resolution1.997Å
Number of Fvs2
In complexTrue
Light chain typeKappa
Has constant regionTrue
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>   Fv information

This PDB has 2 Fv(s).

>   A/B
Fv Details
Heavy chainA
Light chainB
Heavy subgroupIGHV4
Light subgroupIGKV4
SpeciesMUS MUSCULUS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 101 102 103 104 105 106 107 108 109 110 111 112 113
Q G Q L Q E S G P S L V K P S Q T L S L T C T V S G D S I T R G Y W N W I R K H P G K G L E Y I G Y I S Y T G S T Y S N L S L K S R V T I S R D T S K N Q Y Y L K L S S V T A A D T A V Y Y C A T S T G W L D P V D Y W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I V M T Q S P D S L A V S L G E R A T I N C K A S Q N V D T S V A W F Q Q K P G Q P P K A L I Y S A S F R Y S G V P D R F S G S G S G T D F T L T I S S L Q A E D V A V Y F C Q Q Y Y G Y P F T F G Q G T K L E I K

Antigen Details
Antigen chainsC
Antigen typeprotein
Antigen nameprogrammed cell death 1 ligand 1
Antigen speciesHOMO SAPIENS
Antigen sequenceMRIFAVFIFMTYWHLLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNK

CDR Sequences (chothia definition)
CDRH1GDSITRG
CDRH2SYTGS
CDRH3STGWLDPVDY
CDRL1KASQNVDTSVA
CDRL2SASFRYS
CDRL3QQYYGYPFT

Orientation Angles (from ABangle)
HL-62.13°
HC173.53°
HC2114.71°
LC1116.62°
LC278.35°
dc16.28Å
>   H/L
Fv Details
Heavy chainH
Light chainL
Heavy subgroupIGHV4
Light subgroupIGKV4
SpeciesMUS MUSCULUS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 101 102 103 104 105 106 107 108 109 110 111 112 113
Q G Q L Q E S G P S L V K P S Q T L S L T C T V S G D S I T R G Y W N W I R K H P G K G L E Y I G Y I S Y T G S T Y S N L S L K S R V T I S R D T S K N Q Y Y L K L S S V T A A D T A V Y Y C A T S T G W L D P V D Y W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I V M T Q S P D S L A V S L G E R A T I N C K A S Q N V D T S V A W F Q Q K P G Q P P K A L I Y S A S F R Y S G V P D R F S G S G S G T D F T L T I S S L Q A E D V A V Y F C Q Q Y Y G Y P F T F G Q G T K L E I K

Antigen Details
Antigen chainsM
Antigen typeprotein
Antigen nameprogrammed cell death 1 ligand 1
Antigen speciesHOMO SAPIENS
Antigen sequenceMRIFAVFIFMTYWHLLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNK

CDR Sequences (chothia definition)
CDRH1GDSITRG
CDRH2SYTGS
CDRH3STGWLDPVDY
CDRL1KASQNVDTSVA
CDRL2SASFRYS
CDRL3QQYYGYPFT

Orientation Angles (from ABangle)
HL-62.98°
HC173.0°
HC2114.7°
LC1117.74°
LC277.14°
dc16.23Å
>   Downloads

Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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