Structure Viewer: 7cn2

> Structure details

Subparticle Refinement of Human Papillomavirus Type 16 Pesudovirus in complex with H16.001 Fab

PDB	7cn2
Species	ORYCTOLAGUS CUNICULUS
Method	ELECTRON MICROSCOPY
Resolution	3.43Å
Number of Fvs	6
In complex	True
Light chain type	Kappa
Has constant region	False

> Fv information

This PDB has 6 Fv(s).

Fv Details
Heavy chain	G
Light chain	g
Heavy subgroup	IGHV1
Light subgroup	IGKV1
Species	ORYCTOLAGUS CUNICULUS
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

1	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	S	V	K	E	S	E	G	R	L	V	T	P	G	T	P	L	T	L	T	C	T	A	S	G	F	T	M	S	R	Y	H	M	T	W	V	R	Q	A	P	G	K	G	L	E	W	I	G	I	I	Y	A	R	N	S	D	T	Y	Y	A	N	W	A	K	G	R	F	T	I	S	K	T	S	T	T	V	D	L	K	I	T	S	P	T	I	E	D	T	A	T	Y	F	C	A	R	V	D	S	D	S	S	G	A	F	D	R	L	D	L	W	G	Q	G	T	L	V	T	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
D	P	M	L	T	Q	T	A	A	S	V	E	V	A	V	G	G	T	V	T	I	K	C	Q	A	S	Q	S	I	G	G	Y	L	S	W	Y	Q	Q	K	P	G	Q	R	P	K	L	L	I	Y	R	A	S	T	L	A	S	G	V	P	S	R	F	K	G	S	G	S	G	T	E	Y	T	L	T	F	S	G	V	E	C	A	D	A	A	A	Y	Y	C	Q	Q	G	Y	T	S	S	D	I	N	N	A	F	G	G	G	T	E	V	V	V	K

Antigen Details
Antigen chains	E
Antigen type	protein
Antigen name	major capsid protein l1
Antigen species	HUMAN PAPILLOMAVIRUS TYPE 16
Antigen sequence	MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRKL

CDR Sequences (chothia definition)
CDRH1	GFTMSRY
CDRH2	YARNSD
CDRH3	VDSDSSGAFDRLDL
CDRL1	QASQSIGGYLS
CDRL2	RASTLAS
CDRL3	QQGYTSSDINNA

Orientation Angles (from ABangle)
HL	-51.8°
HC1	70.78°
HC2	119.18°
LC1	122.0°
LC2	86.23°
dc	16.97Å

Fv Details
Heavy chain	I
Light chain	i
Heavy subgroup	IGHV1
Light subgroup	IGKV1
Species	ORYCTOLAGUS CUNICULUS
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

1	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	S	V	K	E	S	E	G	R	L	V	T	P	G	T	P	L	T	L	T	C	T	A	S	G	F	T	M	S	R	Y	H	M	T	W	V	R	Q	A	P	G	K	G	L	E	W	I	G	I	I	Y	A	R	N	S	D	T	Y	Y	A	N	W	A	K	G	R	F	T	I	S	K	T	S	T	T	V	D	L	K	I	T	S	P	T	I	E	D	T	A	T	Y	F	C	A	R	V	D	S	D	S	S	G	A	F	D	R	L	D	L	W	G	Q	G	T	L	V	T	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
D	P	M	L	T	Q	T	A	A	S	V	E	V	A	V	G	G	T	V	T	I	K	C	Q	A	S	Q	S	I	G	G	Y	L	S	W	Y	Q	Q	K	P	G	Q	R	P	K	L	L	I	Y	R	A	S	T	L	A	S	G	V	P	S	R	F	K	G	S	G	S	G	T	E	Y	T	L	T	F	S	G	V	E	C	A	D	A	A	A	Y	Y	C	Q	Q	G	Y	T	S	S	D	I	N	N	A	F	G	G	G	T	E	V	V	V	K

Antigen Details
Antigen chains	F
Antigen type	protein
Antigen name	major capsid protein l1
Antigen species	HUMAN PAPILLOMAVIRUS TYPE 16
Antigen sequence	MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRKL

CDR Sequences (chothia definition)
CDRH1	GFTMSRY
CDRH2	YARNSD
CDRH3	VDSDSSGAFDRLDL
CDRL1	QASQSIGGYLS
CDRL2	RASTLAS
CDRL3	QQGYTSSDINNA

Orientation Angles (from ABangle)
HL	-50.12°
HC1	70.57°
HC2	119.72°
LC1	121.81°
LC2	86.26°
dc	17.0Å

Fv Details
Heavy chain	M
Light chain	m
Heavy subgroup	IGHV1
Light subgroup	IGKV1
Species	ORYCTOLAGUS CUNICULUS
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

1	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	S	V	K	E	S	E	G	R	L	V	T	P	G	T	P	L	T	L	T	C	T	A	S	G	F	T	M	S	R	Y	H	M	T	W	V	R	Q	A	P	G	K	G	L	E	W	I	G	I	I	Y	A	R	N	S	D	T	Y	Y	A	N	W	A	K	G	R	F	T	I	S	K	T	S	T	T	V	D	L	K	I	T	S	P	T	I	E	D	T	A	T	Y	F	C	A	R	V	D	S	D	S	S	G	A	F	D	R	L	D	L	W	G	Q	G	T	L	V	T	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
D	P	M	L	T	Q	T	A	A	S	V	E	V	A	V	G	G	T	V	T	I	K	C	Q	A	S	Q	S	I	G	G	Y	L	S	W	Y	Q	Q	K	P	G	Q	R	P	K	L	L	I	Y	R	A	S	T	L	A	S	G	V	P	S	R	F	K	G	S	G	S	G	T	E	Y	T	L	T	F	S	G	V	E	C	A	D	A	A	A	Y	Y	C	Q	Q	G	Y	T	S	S	D	I	N	N	A	F	G	G	G	T	E	V	V	V	K

Antigen Details
Antigen chains	A
Antigen type	protein
Antigen name	major capsid protein l1
Antigen species	HUMAN PAPILLOMAVIRUS TYPE 16
Antigen sequence	MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRKL

CDR Sequences (chothia definition)
CDRH1	GFTMSRY
CDRH2	YARNSD
CDRH3	VDSDSSGAFDRLDL
CDRL1	QASQSIGGYLS
CDRL2	RASTLAS
CDRL3	QQGYTSSDINNA

Orientation Angles (from ABangle)
HL	-52.37°
HC1	70.15°
HC2	120.16°
LC1	122.27°
LC2	84.35°
dc	17.35Å

Fv Details
Heavy chain	J
Light chain	j
Heavy subgroup	IGHV1
Light subgroup	IGKV1
Species	ORYCTOLAGUS CUNICULUS
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

1	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	S	V	K	E	S	E	G	R	L	V	T	P	G	T	P	L	T	L	T	C	T	A	S	G	F	T	M	S	R	Y	H	M	T	W	V	R	Q	A	P	G	K	G	L	E	W	I	G	I	I	Y	A	R	N	S	D	T	Y	Y	A	N	W	A	K	G	R	F	T	I	S	K	T	S	T	T	V	D	L	K	I	T	S	P	T	I	E	D	T	A	T	Y	F	C	A	R	V	D	S	D	S	S	G	A	F	D	R	L	D	L	W	G	Q	G	T	L	V	T	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
D	P	M	L	T	Q	T	A	A	S	V	E	V	A	V	G	G	T	V	T	I	K	C	Q	A	S	Q	S	I	G	G	Y	L	S	W	Y	Q	Q	K	P	G	Q	R	P	K	L	L	I	Y	R	A	S	T	L	A	S	G	V	P	S	R	F	K	G	S	G	S	G	T	E	Y	T	L	T	F	S	G	V	E	C	A	D	A	A	A	Y	Y	C	Q	Q	G	Y	T	S	S	D	I	N	N	A	F	G	G	G	T	E	V	V	V	K

Antigen Details
Antigen chains	B
Antigen type	protein
Antigen name	major capsid protein l1
Antigen species	HUMAN PAPILLOMAVIRUS TYPE 16
Antigen sequence	MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRKL

CDR Sequences (chothia definition)
CDRH1	GFTMSRY
CDRH2	YARNSD
CDRH3	VDSDSSGAFDRLDL
CDRL1	QASQSIGGYLS
CDRL2	RASTLAS
CDRL3	QQGYTSSDINNA

Orientation Angles (from ABangle)
HL	-52.36°
HC1	70.39°
HC2	118.98°
LC1	121.4°
LC2	84.46°
dc	17.06Å

Fv Details
Heavy chain	H
Light chain	L
Heavy subgroup	IGHV1
Light subgroup	IGKV1
Species	ORYCTOLAGUS CUNICULUS
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

1	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	S	V	K	E	S	E	G	R	L	V	T	P	G	T	P	L	T	L	T	C	T	A	S	G	F	T	M	S	R	Y	H	M	T	W	V	R	Q	A	P	G	K	G	L	E	W	I	G	I	I	Y	A	R	N	S	D	T	Y	Y	A	N	W	A	K	G	R	F	T	I	S	K	T	S	T	T	V	D	L	K	I	T	S	P	T	I	E	D	T	A	T	Y	F	C	A	R	V	D	S	D	S	S	G	A	F	D	R	L	D	L	W	G	Q	G	T	L	V	T	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
D	P	M	L	T	Q	T	A	A	S	V	E	V	A	V	G	G	T	V	T	I	K	C	Q	A	S	Q	S	I	G	G	Y	L	S	W	Y	Q	Q	K	P	G	Q	R	P	K	L	L	I	Y	R	A	S	T	L	A	S	G	V	P	S	R	F	K	G	S	G	S	G	T	E	Y	T	L	T	F	S	G	V	E	C	A	D	A	A	A	Y	Y	C	Q	Q	G	Y	T	S	S	D	I	N	N	A	F	G	G	G	T	E	V	V	V	K

Antigen Details
Antigen chains	D
Antigen type	protein
Antigen name	major capsid protein l1
Antigen species	HUMAN PAPILLOMAVIRUS TYPE 16
Antigen sequence	MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRKL

CDR Sequences (chothia definition)
CDRH1	GFTMSRY
CDRH2	YARNSD
CDRH3	VDSDSSGAFDRLDL
CDRL1	QASQSIGGYLS
CDRL2	RASTLAS
CDRL3	QQGYTSSDINNA

Orientation Angles (from ABangle)
HL	-52.6°
HC1	70.11°
HC2	118.27°
LC1	121.59°
LC2	84.59°
dc	16.87Å

Fv Details
Heavy chain	K
Light chain	k
Heavy subgroup	IGHV1
Light subgroup	IGKV1
Species	ORYCTOLAGUS CUNICULUS
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

1	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	S	V	K	E	S	E	G	R	L	V	T	P	G	T	P	L	T	L	T	C	T	A	S	G	F	T	M	S	R	Y	H	M	T	W	V	R	Q	A	P	G	K	G	L	E	W	I	G	I	I	Y	A	R	N	S	D	T	Y	Y	A	N	W	A	K	G	R	F	T	I	S	K	T	S	T	T	V	D	L	K	I	T	S	P	T	I	E	D	T	A	T	Y	F	C	A	R	V	D	S	D	S	S	G	A	F	D	R	L	D	L	W	G	Q	G	T	L	V	T	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
D	P	M	L	T	Q	T	A	A	S	V	E	V	A	V	G	G	T	V	T	I	K	C	Q	A	S	Q	S	I	G	G	Y	L	S	W	Y	Q	Q	K	P	G	Q	R	P	K	L	L	I	Y	R	A	S	T	L	A	S	G	V	P	S	R	F	K	G	S	G	S	G	T	E	Y	T	L	T	F	S	G	V	E	C	A	D	A	A	A	Y	Y	C	Q	Q	G	Y	T	S	S	D	I	N	N	A	F	G	G	G	T	E	V	V	V	K

Antigen Details
Antigen chains	C
Antigen type	protein
Antigen name	major capsid protein l1
Antigen species	HUMAN PAPILLOMAVIRUS TYPE 16
Antigen sequence	MSLWLPSEATVYLPPVPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGAVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRKL

CDR Sequences (chothia definition)
CDRH1	GFTMSRY
CDRH2	YARNSD
CDRH3	VDSDSSGAFDRLDL
CDRL1	QASQSIGGYLS
CDRL2	RASTLAS
CDRL3	QQGYTSSDINNA

Orientation Angles (from ABangle)
HL	-51.31°
HC1	70.09°
HC2	119.27°
LC1	122.1°
LC2	85.71°
dc	17.24Å

Additional links and files for download: see help for more details.

Chothia-numbered structure	Download
IMGT-numbered structure	Download
Non-annotated structure from the PDB	Download
Summary file for this antibody	Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

Our privacy policy