Structure Viewer: 7d9z

>   Structure details

Crystal Structure of anti-Basigin Fab Fragment

PDB7d9z
SpeciesORYCTOLAGUS CUNICULUS
MethodX-RAY DIFFRACTION
Resolution1.123Å
Number of Fvs1
In complexFalse
Light chain typeKappa
Has constant regionTrue
>   Structure visualisation
Please note the WebGL plugin needs to be enabled to use PV Viewer.

Display options:














>   Fv information

This PDB has 1 Fv(s).

>   H/L
Fv Details
Heavy chainH
Light chainL
Heavy subgroupIGHV1
Light subgroupIGKV1
SpeciesORYCTOLAGUS CUNICULUS
In complex?False
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 101 102 103 104 105 106 107 108 109 110 111 112 113
Q S V E E S G G R L V T P G T P L T L T C T V S G F S L S D Y A M S W V R Q A P G K G L E W I G I I Y A S G S T Y Y A S W A K G R F T I S K T S T T V D L K I T S P T T E D T A T Y F C A R Y Y A G S D I W G P G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 95A 95B 95C 96 97 98 99 100 101 102 103 104 105 106 107
D V V M T Q T P S S V S A A V G G T V T I N C Q A S Q S I S A Y L A W Y Q Q K P G Q P P K L L I Y D A S D L A S G V S S R F K G S G S G T Q F T L T I S D L E C A D A A T Y Y C Q T Y Y A I I T Y G A A F G G G T E V V V K


CDR Sequences (chothia definition)
CDRH1GFSLSDY
CDRH2YASGS
CDRH3YYAGSDI
CDRL1QASQSISAYLA
CDRL2DASDLAS
CDRL3QTYYAIITYGAA

Orientation Angles (from ABangle)
HL-55.07°
HC170.01°
HC2119.1°
LC1121.56°
LC281.85°
dc16.04Å
>   Downloads

Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

Our privacy policy