Structure Viewer: 7shz

>   Structure details

Ige-Fc in complex with Hae

PDB7shz
SpeciesHOMO SAPIENS
MethodX-RAY DIFFRACTION
Resolution3.0Å
Number of Fvs4
In complexTrue
Light chain typeKappa
Has constant regionFalse
AffinityNA
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>   Fv information

This PDB has 4 Fv(s).

>   E/F
Fv Details
Heavy chainE
Light chainF
Heavy subgroupIGHV3
Light subgroupIGKV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 31A 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 101 102 103 104 105 106 107 108 109 110 111 112 113
E V Q L V E S G G G L V Q P G G S L R L S C A V S G Y S I T S G Y S W N W I R Q A P G K G L E W V A S I K Y S G E T K Y N P S V K G R I T I S R D D S K N T F Y L Q M N S L R A E D T A V Y Y C A R G S H Y F G H W H F A V W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 30D 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I Q L T Q S P S S L S A S V G D R V T I T C R A S K P V D G E G D S Y L N W Y Q Q K P G K A P K L L I Y A A S Y L E S G V P S R F S G S G S G T D F T L T I S S L Q P E D F A T Y Y C Q Q S H E D P Y T F G Q G T K V E I K

Antigen Details
Antigen chainsB
Antigen typeprotein
Antigen nameige fc
Antigen speciesHOMO SAPIENS
Antigen sequenceAPMAEGGGQNHHHHHHHHGGENLYFQGGSCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRAVSVNP

CDR Sequences (chothia definition)
CDRH1GYSITSGY
CDRH2KYSGE
CDRH3GSHYFGHWHFAV
CDRL1RASKPVDGEGDSYLN
CDRL2AASYLES
CDRL3QQSHEDPYT

Orientation Angles (from ABangle)
HL-65.53°
HC174.38°
HC2119.74°
LC1118.49°
LC282.09°
dc15.94Å
>   I/J
Fv Details
Heavy chainI
Light chainJ
Heavy subgroupIGHV3
Light subgroupIGKV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 31A 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 101 102 103 104 105 106 107 108 109 110 111 112 113
E V Q L V E S G G G L V Q P G G S L R L S C A V S G Y S I T S G Y S W N W I R Q A P G K G L E W V A S I K Y S G E T K Y N P S V K G R I T I S R D D S K N T F Y L Q M N S L R A E D T A V Y Y C A R G S H Y F G H W H F A V W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 30D 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I Q L T Q S P S S L S A S V G D R V T I T C R A S K P V D G E G D S Y L N W Y Q Q K P G K A P K L L I Y A A S Y L E S G V P S R F S G S G S G T D F T L T I S S L Q P E D F A T Y Y C Q Q S H E D P Y T F G Q G T K V E I K

Antigen Details
Antigen chainsG
Antigen typeprotein
Antigen nameige fc
Antigen speciesHOMO SAPIENS
Antigen sequenceAPMAEGGGQNHHHHHHHHGGENLYFQGGSCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRAVSVNP

CDR Sequences (chothia definition)
CDRH1GYSITSGY
CDRH2KYSGE
CDRH3GSHYFGHWHFAV
CDRL1RASKPVDGEGDSYLN
CDRL2AASYLES
CDRL3QQSHEDPYT

Orientation Angles (from ABangle)
HL-64.22°
HC174.11°
HC2119.14°
LC1119.53°
LC282.13°
dc15.98Å
>   C/D
Fv Details
Heavy chainC
Light chainD
Heavy subgroupIGHV3
Light subgroupIGKV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 31A 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 101 102 103 104 105 106 107 108 109 110 111 112 113
E V Q L V E S G G G L V Q P G G S L R L S C A V S G Y S I T S G Y S W N W I R Q A P G K G L E W V A S I K Y S G E T K Y N P S V K G R I T I S R D D S K N T F Y L Q M N S L R A E D T A V Y Y C A R G S H Y F G H W H F A V W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 30D 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I Q L T Q S P S S L S A S V G D R V T I T C R A S K P V D G E G D S Y L N W Y Q Q K P G K A P K L L I Y A A S Y L E S G V P S R F S G S G S G T D F T L T I S S L Q P E D F A T Y Y C Q Q S H E D P Y T F G Q G T K V E I K

Antigen Details
Antigen chainsA
Antigen typeprotein
Antigen nameige fc
Antigen speciesHOMO SAPIENS
Antigen sequenceAPMAEGGGQNHHHHHHHHGGENLYFQGGSCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRAVSVNP

CDR Sequences (chothia definition)
CDRH1GYSITSGY
CDRH2KYSGE
CDRH3GSHYFGHWHFAV
CDRL1RASKPVDGEGDSYLN
CDRL2AASYLES
CDRL3QQSHEDPYT

Orientation Angles (from ABangle)
HL-63.66°
HC174.73°
HC2120.0°
LC1120.61°
LC281.76°
dc15.62Å
>   K/L
Fv Details
Heavy chainK
Light chainL
Heavy subgroupIGHV3
Light subgroupIGKV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 31A 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 101 102 103 104 105 106 107 108 109 110 111 112 113
E V Q L V E S G G G L V Q P G G S L R L S C A V S G Y S I T S G Y S W N W I R Q A P G K G L E W V A S I K Y S G E T K Y N P S V K G R I T I S R D D S K N T F Y L Q M N S L R A E D T A V Y Y C A R G S H Y F G H W H F A V W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 30D 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I Q L T Q S P S S L S A S V G D R V T I T C R A S K P V D G E G D S Y L N W Y Q Q K P G K A P K L L I Y A A S Y L E S G V P S R F S G S G S G T D F T L T I S S L Q P E D F A T Y Y C Q Q S H E D P Y T F G Q G T K V E I K

Antigen Details
Antigen chainsH
Antigen typeprotein
Antigen nameige fc
Antigen speciesHOMO SAPIENS
Antigen sequenceAPMAEGGGQNHHHHHHHHGGENLYFQGGSCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRAVSVNP

CDR Sequences (chothia definition)
CDRH1GYSITSGY
CDRH2KYSGE
CDRH3GSHYFGHWHFAV
CDRL1RASKPVDGEGDSYLN
CDRL2AASYLES
CDRL3QQSHEDPYT

Orientation Angles (from ABangle)
HL-64.26°
HC174.54°
HC2120.75°
LC1118.83°
LC282.23°
dc16.0Å
>   Occurences in auxilliary databases

Occurences of this structure in other OPIG databases.

TheraSAbDab link
CoVAbDab N/A
>   Downloads

Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

SAbDab papers

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

Dunbar, J., Krawczyk, K. et al. (2014) SAbDab: the Structural Antibody Database. Nucleic Acids Res. 42(D1):D1140-D1146 [link]

Thera-SAbDab paper

Raybould, M.I.J., Marks, C. et al (2020) Thera-SAbDab: the Therapeutic Structural Antibody Database. Nucleic Acids Res. 48(D1):D383-D388. [link]

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