Structure Viewer: 8fan

>   Structure details

Crystal Structure of Ky15.1 Fab in complex with Circumsporozoite Protein Kqpa Peptide

PDB8fan
SpeciesMUS MUSCULUS
MethodX-RAY DIFFRACTION
Resolution2.9Å
Number of Fvs3
In complexTrue
Light chain typeKappa
Has constant regionTrue
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>   Fv information

This PDB has 3 Fv(s).

>   A/B
Fv Details
Heavy chainA
Light chainB
Heavy subgroupIGHV3
Light subgroupIGKV1
SpeciesMUS MUSCULUS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L V E S G G G V V Q P G R S L R L S C A A S G F T F S N F G M H W V R Q T P D R G L E W V A I I W F D G S N T F Y A D S V K G R F T I S R D N Y K N T L Y L Q M N S L R A E D T A V Y F C A R S F Y S D S A G S L F D Y W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 96 97 98 99 100 101 102 103 104 105 106 107
D I Q M T Q S P S T L S A S V G D R V T I T C R A S Q S I S S W V A W Y Q Q K P G K A P K L L I Y K A S D L E T G V P S R F S G S G S G T E F T L T I S G L Q P D D F V T Y Y C L Q N M R Y W T F G Q G T K V E I K

Antigen Details
Antigen chainsP
Antigen typepeptide
Antigen namecircumsporozoite protein kqpa peptide
Antigen speciesPLASMODIUM FALCIPARUM
Antigen sequenceKQPADGNPDPNANPN

CDR Sequences (chothia definition)
CDRH1GFTFSNF
CDRH2WFDGSN
CDRH3SFYSDSAGSLFDY
CDRL1RASQSISSWVA
CDRL2KASDLET
CDRL3LQNMRYWT

Orientation Angles (from ABangle)
HL-67.6°
HC173.95°
HC2120.83°
LC1118.1°
LC278.94°
dc16.54Å
>   C/D
Fv Details
Heavy chainC
Light chainD
Heavy subgroupIGHV3
Light subgroupIGKV1
SpeciesMUS MUSCULUS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L V E S G G G V V Q P G R S L R L S C A A S G F T F S N F G M H W V R Q T P D R G L E W V A I I W F D G S N T F Y A D S V K G R F T I S R D N Y K N T L Y L Q M N S L R A E D T A V Y F C A R S F Y S D S A G S L F D Y W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 96 97 98 99 100 101 102 103 104 105 106 107
D I Q M T Q S P S T L S A S V G D R V T I T C R A S Q S I S S W V A W Y Q Q K P G K A P K L L I Y K A S D L E T G V P S R F S G S G S G T E F T L T I S G L Q P D D F V T Y Y C L Q N M R Y W T F G Q G T K V E I K

Antigen Details
Antigen chainsQ
Antigen typepeptide
Antigen namecircumsporozoite protein kqpa peptide
Antigen speciesPLASMODIUM FALCIPARUM
Antigen sequenceKQPADGNPDPNANPN

CDR Sequences (chothia definition)
CDRH1GFTFSNF
CDRH2WFDGSN
CDRH3SFYSDSAGSLFDY
CDRL1RASQSISSWVA
CDRL2KASDLET
CDRL3LQNMRYWT

Orientation Angles (from ABangle)
HL-66.41°
HC174.3°
HC2120.61°
LC1118.95°
LC279.78°
dc16.44Å
>   E/F
Fv Details
Heavy chainE
Light chainF
Heavy subgroupIGHV3
Light subgroupIGKV1
SpeciesMUS MUSCULUS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L V E S G G G V V Q P G R S L R L S C A A S G F T F S N F G M H W V R Q T P D R G L E W V A I I W F D G S N T F Y A D S V K G R F T I S R D N Y K N T L Y L Q M N S L R A E D T A V Y F C A R S F Y S D S A G S L F D Y W G Q G T L V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 96 97 98 99 100 101 102 103 104 105 106 107
D I Q M T Q S P S T L S A S V G D R V T I T C R A S Q S I S S W V A W Y Q Q K P G K A P K L L I Y K A S D L E T G V P S R F S G S G S G T E F T L T I S G L Q P D D F V T Y Y C L Q N M R Y W T F G Q G T K V E I K

Antigen Details
Antigen chainsR
Antigen typepeptide
Antigen namecircumsporozoite protein kqpa peptide
Antigen speciesPLASMODIUM FALCIPARUM
Antigen sequenceKQPADGNPDPNANPN

CDR Sequences (chothia definition)
CDRH1GFTFSNF
CDRH2WFDGSN
CDRH3SFYSDSAGSLFDY
CDRL1RASQSISSWVA
CDRL2KASDLET
CDRL3LQNMRYWT

Orientation Angles (from ABangle)
HL-67.62°
HC174.37°
HC2126.4°
LC1116.73°
LC272.57°
dc16.88Å
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Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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