Details for 3e3q

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Structure information

Structure of the 3alpham13 High-affinity Mutant of the 2C TCR in complex with Ld/Ql9

Item	Info
PDB	3e3q
Organism	MUS MUSCULUS
Method	X-RAY DIFFRACTION
Resolution	2.95Å
Number of TCRs	8

Paired chains information

This PDB has 8 TCR(s).

E / D

TCR Details:

Item	Info
VB chain	E
VA chain	D
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV9/TRAJ35
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	Q
Antigen Type	Peptide
Antigen Organism	SYNTHETIC CONSTRUCT
Antigen Sequence	QLSPFPFDL
Antigen Length	9

MHC details:

Item	Info
MHC Chain	A \| NA
MHC Type	MH1
MHC Species	mouse
MHC IMGT details	H2-Ld-2

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	N
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	E	L	R	L	I	Y	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	A	G	S	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
K	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
N	F	S	L	T	L	E	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	T	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	G	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

FASTA file

A3	A4	A5	A6	A7	A8	A9	A10
S	V	T	Q	P	D	A	R
A11	A12	A13	A14	A15	A16	A17	A18
V	T	V	S	E	G	A	S
A19	A20	A21	A22	A23	A24	A25	A26
L	Q	L	R	C	K	Y	S
A27	A28	A29	A36	A37	A38	A39	A40
Y	S	A	T	P	Y	L	F
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	V	Q	Y	P	R	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	L	L	L	K	Y
A57	A58	A59	A62	A63	A64	A65	A66
Y	S	G	D	P	V	V	Q
A67	A68	A74	A75	A76	A77	A78	A79
G	V	N	G	F	E	A	E
A80	A81	A82	A83	A84	A85	A86	A87
F	S	K	S	N	S	S	F
A88	A89	A90	A91	A92	A93	A94	A95
H	L	R	K	A	S	V	H
A96	A97	A98	A99	A100	A101	A102	A103
R	S	D	S	A	V	Y	F
A104	A105	A106	A107	A108	A109	A113	A114
C	A	V	S	D	P	P	P
A115	A116	A117	A118	A119	A120	A121	A122
L	L	T	F	G	S	G	T
A123	A124	A125	A126
K	V	I	V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	AVSDPPPLLT	None	10
CDRA2	YYSGDPVV	None	8
CDRA1	YSATPY	None	6

Orientation and docking angles:

Angle	Value
BC2	103.32°
BC1	72.06°
BA	-59.90°
AC2	80.87°
AC1	125.10°
dc	16.80Å
Docking angle	44.85°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
6puk_ED	103.74°	72.74°	-60.61°	80.55°	124.32°	16.82Å	1.4
2e7l_CB	104.72°	71.98°	-59.47°	80.72°	125.33°	16.84Å	1.5
4pjx_FE	103.82°	72.61°	-59.27°	80.63°	124.00°	16.56Å	1.5
2oi9_CB	104.42°	72.96°	-60.02°	81.13°	125.10°	16.47Å	1.5
5u1r_GB	103.39°	73.02°	-60.50°	80.34°	124.17°	16.71Å	1.6

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
4yfl_HL	109.78°	73.75°	-56.79°	79.59°	122.71°	16.13Å	7.9
1ghf_HL	110.63°	71.68°	-61.52°	81.98°	122.12°	16.05Å	8.2
1nma_HL	109.88°	72.48°	-61.03°	81.63°	120.29°	16.40Å	8.3
3bgf_BC	109.96°	71.90°	-55.10°	81.62°	123.51°	15.76Å	8.4
4dcq_BA	108.30°	73.42°	-64.76°	82.94°	120.98°	16.23Å	8.5

F / C

TCR Details:

Item	Info
VB chain	F
VA chain	C
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV9/TRAJ35
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	G
Antigen Type	Peptide
Antigen Organism	SYNTHETIC CONSTRUCT
Antigen Sequence	QLSPFPFDL
Antigen Length	9

MHC details:

Item	Info
MHC Chain	B \| NA
MHC Type	MH1
MHC Species	mouse
MHC IMGT details	H2-Ld-2

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	N
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	E	L	R	L	I	Y	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	A	G	S	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
K	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
N	F	S	L	T	L	E	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	T	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	G	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

FASTA file

A3	A4	A5	A6	A7	A8	A9	A10
S	V	T	Q	P	D	A	R
A11	A12	A13	A14	A15	A16	A17	A18
V	T	V	S	E	G	A	S
A19	A20	A21	A22	A23	A24	A25	A26
L	Q	L	R	C	K	Y	S
A27	A28	A29	A36	A37	A38	A39	A40
Y	S	A	T	P	Y	L	F
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	V	Q	Y	P	R	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	L	L	L	K	Y
A57	A58	A59	A62	A63	A64	A65	A66
Y	S	G	D	P	V	V	Q
A67	A68	A74	A75	A76	A77	A78	A79
G	V	N	G	F	E	A	E
A80	A81	A82	A83	A84	A85	A86	A87
F	S	K	S	N	S	S	F
A88	A89	A90	A91	A92	A93	A94	A95
H	L	R	K	A	S	V	H
A96	A97	A98	A99	A100	A101	A102	A103
R	S	D	S	A	V	Y	F
A104	A105	A106	A107	A108	A109	A113	A114
C	A	V	S	D	P	P	P
A115	A116	A117	A118	A119	A120	A121	A122
L	L	T	F	G	S	G	T
A123	A124	A125	A126
K	V	I	V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	AVSDPPPLLT	None	10
CDRA2	YYSGDPVV	None	8
CDRA1	YSATPY	None	6

Orientation and docking angles:

Angle	Value
BC2	103.27°
BC1	71.80°
BA	-59.98°
AC2	81.04°
AC1	125.23°
dc	16.79Å
Docking angle	45.26°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
2e7l_CB	104.72°	71.98°	-59.47°	80.72°	125.33°	16.84Å	1.6
6puk_ED	103.74°	72.74°	-60.61°	80.55°	124.32°	16.82Å	1.6
2oi9_CB	104.42°	72.96°	-60.02°	81.13°	125.10°	16.47Å	1.7
5u1r_GB	103.39°	73.02°	-60.50°	80.34°	124.17°	16.71Å	1.8
4pjx_FE	103.82°	72.61°	-59.27°	80.63°	124.00°	16.56Å	1.8

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
4yfl_HL	109.78°	73.75°	-56.79°	79.59°	122.71°	16.13Å	8.1
1ghf_HL	110.63°	71.68°	-61.52°	81.98°	122.12°	16.05Å	8.2
1nma_HL	109.88°	72.48°	-61.03°	81.63°	120.29°	16.40Å	8.4
4dcq_BA	108.30°	73.42°	-64.76°	82.94°	120.98°	16.23Å	8.5
3bgf_BC	109.96°	71.90°	-55.10°	81.62°	123.51°	15.76Å	8.5

J / I

TCR Details:

Item	Info
VB chain	J
VA chain	I
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV9/TRAJ35
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	K
Antigen Type	Peptide
Antigen Organism	SYNTHETIC CONSTRUCT
Antigen Sequence	QLSPFPFDL
Antigen Length	9

MHC details:

Item	Info
MHC Chain	H \| NA
MHC Type	MH1
MHC Species	mouse
MHC IMGT details	H2-Ld-2

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	N
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	E	L	R	L	I	Y	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	A	G	S	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
K	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
N	F	S	L	T	L	E	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	T	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	G	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

FASTA file

A3	A4	A5	A6	A7	A8	A9	A10
S	V	T	Q	P	D	A	R
A11	A12	A13	A14	A15	A16	A17	A18
V	T	V	S	E	G	A	S
A19	A20	A21	A22	A23	A24	A25	A26
L	Q	L	R	C	K	Y	S
A27	A28	A29	A36	A37	A38	A39	A40
Y	S	A	T	P	Y	L	F
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	V	Q	Y	P	R	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	L	L	L	K	Y
A57	A58	A59	A62	A63	A64	A65	A66
Y	S	G	D	P	V	V	Q
A67	A68	A74	A75	A76	A77	A78	A79
G	V	N	G	F	E	A	E
A80	A81	A82	A83	A84	A85	A86	A87
F	S	K	S	N	S	S	F
A88	A89	A90	A91	A92	A93	A94	A95
H	L	R	K	A	S	V	H
A96	A97	A98	A99	A100	A101	A102	A103
R	S	D	S	A	V	Y	F
A104	A105	A106	A107	A108	A109	A113	A114
C	A	V	S	D	P	P	P
A115	A116	A117	A118	A119	A120	A121	A122
L	L	T	F	G	S	G	T
A123	A124	A125	A126
K	V	I	V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	AVSDPPPLLT	None	10
CDRA2	YYSGDPVV	None	8
CDRA1	YSATPY	None	6

Orientation and docking angles:

Angle	Value
BC2	103.36°
BC1	71.56°
BA	-60.33°
AC2	81.03°
AC1	124.91°
dc	16.84Å
Docking angle	44.86°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
6puk_ED	103.74°	72.74°	-60.61°	80.55°	124.32°	16.82Å	1.5
2e7l_CB	104.72°	71.98°	-59.47°	80.72°	125.33°	16.84Å	1.7
4pja_FE	102.90°	72.45°	-60.92°	80.29°	123.91°	16.77Å	1.7
4x6d_FE	104.85°	71.59°	-60.25°	80.32°	124.25°	16.92Å	1.8
5u1r_GB	103.39°	73.02°	-60.50°	80.34°	124.17°	16.71Å	1.8

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
1ghf_HL	110.63°	71.68°	-61.52°	81.98°	122.12°	16.05Å	8.0
1nma_HL	109.88°	72.48°	-61.03°	81.63°	120.29°	16.40Å	8.1
4yfl_HL	109.78°	73.75°	-56.79°	79.59°	122.71°	16.13Å	8.1
4dcq_BA	108.30°	73.42°	-64.76°	82.94°	120.98°	16.23Å	8.2
5te7_HL	110.03°	71.72°	-60.97°	83.32°	120.63°	16.37Å	8.3

N / M

TCR Details:

Item	Info
VB chain	N
VA chain	M
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV9/TRAJ35
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	O
Antigen Type	Peptide
Antigen Organism	SYNTHETIC CONSTRUCT
Antigen Sequence	QLSPFPFDL
Antigen Length	9

MHC details:

Item	Info
MHC Chain	L \| NA
MHC Type	MH1
MHC Species	mouse
MHC IMGT details	H2-Ld-2

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	N
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	E	L	R	L	I	Y	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	A	G	S	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
K	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
N	F	S	L	T	L	E	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	T	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	G	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

FASTA file

A3	A4	A5	A6	A7	A8	A9	A10
S	V	T	Q	P	D	A	R
A11	A12	A13	A14	A15	A16	A17	A18
V	T	V	S	E	G	A	S
A19	A20	A21	A22	A23	A24	A25	A26
L	Q	L	R	C	K	Y	S
A27	A28	A29	A36	A37	A38	A39	A40
Y	S	A	T	P	Y	L	F
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	V	Q	Y	P	R	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	L	L	L	K	Y
A57	A58	A59	A62	A63	A64	A65	A66
Y	S	G	D	P	V	V	Q
A67	A68	A74	A75	A76	A77	A78	A79
G	V	N	G	F	E	A	E
A80	A81	A82	A83	A84	A85	A86	A87
F	S	K	S	N	S	S	F
A88	A89	A90	A91	A92	A93	A94	A95
H	L	R	K	A	S	V	H
A96	A97	A98	A99	A100	A101	A102	A103
R	S	D	S	A	V	Y	F
A104	A105	A106	A107	A108	A109	A113	A114
C	A	V	S	D	P	P	P
A115	A116	A117	A118	A119	A120	A121	A122
L	L	T	F	G	S	G	T
A123	A124	A125	A126
K	V	I	V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	AVSDPPPLLT	None	10
CDRA2	YYSGDPVV	None	8
CDRA1	YSATPY	None	6

Orientation and docking angles:

Angle	Value
BC2	103.85°
BC1	71.84°
BA	-59.79°
AC2	81.45°
AC1	125.08°
dc	16.85Å
Docking angle	45.26°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
2e7l_CB	104.72°	71.98°	-59.47°	80.72°	125.33°	16.84Å	1.2
2oi9_CB	104.42°	72.96°	-60.02°	81.13°	125.10°	16.47Å	1.4
4pjx_FE	103.82°	72.61°	-59.27°	80.63°	124.00°	16.56Å	1.7
6puk_ED	103.74°	72.74°	-60.61°	80.55°	124.32°	16.82Å	1.7
4x6d_FE	104.85°	71.59°	-60.25°	80.32°	124.25°	16.92Å	1.8

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
4yfl_HL	109.78°	73.75°	-56.79°	79.59°	122.71°	16.13Å	7.6
1ghf_HL	110.63°	71.68°	-61.52°	81.98°	122.12°	16.05Å	7.7
1nma_HL	109.88°	72.48°	-61.03°	81.63°	120.29°	16.40Å	7.8
3bgf_BC	109.96°	71.90°	-55.10°	81.62°	123.51°	15.76Å	7.9
5te7_HL	110.03°	71.72°	-60.97°	83.32°	120.63°	16.37Å	7.9

S / R

TCR Details:

Item	Info
VB chain	S
VA chain	R
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV9/TRAJ35
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	T
Antigen Type	Peptide
Antigen Organism	SYNTHETIC CONSTRUCT
Antigen Sequence	QLSPFPFDL
Antigen Length	9

MHC details:

Item	Info
MHC Chain	P \| NA
MHC Type	MH1
MHC Species	mouse
MHC IMGT details	H2-Ld-2

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	N
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	E	L	R	L	I	Y	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	A	G	S	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
K	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
N	F	S	L	T	L	E	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	T	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	G	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

FASTA file

A3	A4	A5	A6	A7	A8	A9	A10
S	V	T	Q	P	D	A	R
A11	A12	A13	A14	A15	A16	A17	A18
V	T	V	S	E	G	A	S
A19	A20	A21	A22	A23	A24	A25	A26
L	Q	L	R	C	K	Y	S
A27	A28	A29	A36	A37	A38	A39	A40
Y	S	A	T	P	Y	L	F
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	V	Q	Y	P	R	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	L	L	L	K	Y
A57	A58	A59	A62	A63	A64	A65	A66
Y	S	G	D	P	V	V	Q
A67	A68	A74	A75	A76	A77	A78	A79
G	V	N	G	F	E	A	E
A80	A81	A82	A83	A84	A85	A86	A87
F	S	K	S	N	S	S	F
A88	A89	A90	A91	A92	A93	A94	A95
H	L	R	K	A	S	V	H
A96	A97	A98	A99	A100	A101	A102	A103
R	S	D	S	A	V	Y	F
A104	A105	A106	A107	A108	A109	A113	A114
C	A	V	S	D	P	P	P
A115	A116	A117	A118	A119	A120	A121	A122
L	L	T	F	G	S	G	T
A123	A124	A125	A126
K	V	I	V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	AVSDPPPLLT	None	10
CDRA2	YYSGDPVV	None	8
CDRA1	YSATPY	None	6

Orientation and docking angles:

Angle	Value
BC2	100.83°
BC1	72.37°
BA	-58.33°
AC2	83.18°
AC1	125.81°
dc	16.62Å
Docking angle	42.29°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
6dfx_JI	101.90°	71.93°	-57.72°	82.26°	125.04°	16.30Å	1.8
6vth_BA	102.74°	71.64°	-57.94°	81.95°	125.13°	17.18Å	2.6
5jzi_ED	102.19°	72.02°	-56.92°	81.33°	126.33°	16.63Å	2.8
2e7l_DA	103.46°	72.58°	-58.01°	82.08°	125.57°	16.65Å	2.9
6jxr_nm	102.17°	73.31°	-56.70°	81.49°	124.59°	16.87Å	3.1

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
3mnw_BA	107.15°	71.13°	-53.34°	82.80°	121.51°	16.47Å	9.2
4ydl_HL	108.56°	70.76°	-54.72°	85.96°	123.49°	15.98Å	9.4

W / V

TCR Details:

Item	Info
VB chain	W
VA chain	V
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV9/TRAJ35
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	X
Antigen Type	Peptide
Antigen Organism	SYNTHETIC CONSTRUCT
Antigen Sequence	QLSPFPFDL
Antigen Length	9

MHC details:

Item	Info
MHC Chain	U \| NA
MHC Type	MH1
MHC Species	mouse
MHC IMGT details	H2-Ld-2

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	N
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	E	L	R	L	I	Y	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	A	G	S	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
K	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
N	F	S	L	T	L	E	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	T	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	G	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

FASTA file

A3	A4	A5	A6	A7	A8	A9	A10
S	V	T	Q	P	D	A	R
A11	A12	A13	A14	A15	A16	A17	A18
V	T	V	S	E	G	A	S
A19	A20	A21	A22	A23	A24	A25	A26
L	Q	L	R	C	K	Y	S
A27	A28	A29	A36	A37	A38	A39	A40
Y	S	A	T	P	Y	L	F
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	V	Q	Y	P	R	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	L	L	L	K	Y
A57	A58	A59	A62	A63	A64	A65	A66
Y	S	G	D	P	V	V	Q
A67	A68	A74	A75	A76	A77	A78	A79
G	V	N	G	F	E	A	E
A80	A81	A82	A83	A84	A85	A86	A87
F	S	K	S	N	S	S	F
A88	A89	A90	A91	A92	A93	A94	A95
H	L	R	K	A	S	V	H
A96	A97	A98	A99	A100	A101	A102	A103
R	S	D	S	A	V	Y	F
A104	A105	A106	A107	A108	A109	A113	A114
C	A	V	S	D	P	P	P
A115	A116	A117	A118	A119	A120	A121	A122
L	L	T	F	G	S	G	T
A123	A124	A125	A126
K	V	I	V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	AVSDPPPLLT	None	10
CDRA2	YYSGDPVV	None	8
CDRA1	YSATPY	None	6

Orientation and docking angles:

Angle	Value
BC2	100.93°
BC1	72.31°
BA	-59.08°
AC2	82.20°
AC1	125.79°
dc	16.55Å
Docking angle	42.61°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
6dfx_JI	101.90°	71.93°	-57.72°	82.26°	125.04°	16.30Å	1.9
6vth_BA	102.74°	71.64°	-57.94°	81.95°	125.13°	17.18Å	2.4
5jzi_ED	102.19°	72.02°	-56.92°	81.33°	126.33°	16.63Å	2.7
2e7l_DA	103.46°	72.58°	-58.01°	82.08°	125.57°	16.65Å	2.8
6vrm_ED	103.62°	72.56°	-58.21°	82.07°	124.91°	17.13Å	3.0

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
3mnw_BA	107.15°	71.13°	-53.34°	82.80°	121.51°	16.47Å	9.6
4ydl_HL	108.56°	70.76°	-54.72°	85.96°	123.49°	15.98Å	10.0

a / Z

TCR Details:

Item	Info
VB chain	a
VA chain	Z
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV9/TRAJ35
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	b
Antigen Type	Peptide
Antigen Organism	SYNTHETIC CONSTRUCT
Antigen Sequence	QLSPFPFDL
Antigen Length	9

MHC details:

Item	Info
MHC Chain	Y \| NA
MHC Type	MH1
MHC Species	mouse
MHC IMGT details	H2-Ld-2

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	N
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	E	L	R	L	I	Y	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	A	G	S	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
K	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
N	F	S	L	T	L	E	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	T	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	G	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

FASTA file

A3	A4	A5	A6	A7	A8	A9	A10
S	V	T	Q	P	D	A	R
A11	A12	A13	A14	A15	A16	A17	A18
V	T	V	S	E	G	A	S
A19	A20	A21	A22	A23	A24	A25	A26
L	Q	L	R	C	K	Y	S
A27	A28	A29	A36	A37	A38	A39	A40
Y	S	A	T	P	Y	L	F
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	V	Q	Y	P	R	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	L	L	L	K	Y
A57	A58	A59	A62	A63	A64	A65	A66
Y	S	G	D	P	V	V	Q
A67	A68	A74	A75	A76	A77	A78	A79
G	V	N	G	F	E	A	E
A80	A81	A82	A83	A84	A85	A86	A87
F	S	K	S	N	S	S	F
A88	A89	A90	A91	A92	A93	A94	A95
H	L	R	K	A	S	V	H
A96	A97	A98	A99	A100	A101	A102	A103
R	S	D	S	A	V	Y	F
A104	A105	A106	A107	A108	A109	A113	A114
C	A	V	S	D	P	P	P
A115	A116	A117	A118	A119	A120	A121	A122
L	L	T	F	G	S	G	T
A123	A124	A125	A126
K	V	I	V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	AVSDPPPLLT	None	10
CDRA2	YYSGDPVV	None	8
CDRA1	YSATPY	None	6

Orientation and docking angles:

Angle	Value
BC2	100.79°
BC1	72.01°
BA	-58.53°
AC2	82.50°
AC1	126.04°
dc	16.61Å
Docking angle	42.20°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
6dfx_JI	101.90°	71.93°	-57.72°	82.26°	125.04°	16.30Å	1.7
6vth_BA	102.74°	71.64°	-57.94°	81.95°	125.13°	17.18Å	2.4
5jzi_ED	102.19°	72.02°	-56.92°	81.33°	126.33°	16.63Å	2.5
2e7l_DA	103.46°	72.58°	-58.01°	82.08°	125.57°	16.65Å	2.9
5jzi_JI	103.64°	71.67°	-57.46°	81.83°	125.91°	16.54Å	3.1

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
3mnw_BA	107.15°	71.13°	-53.34°	82.80°	121.51°	16.47Å	9.4
4ydl_HL	108.56°	70.76°	-54.72°	85.96°	123.49°	15.98Å	9.8

e / d

TCR Details:

Item	Info
VB chain	e
VA chain	d
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV9/TRAJ35
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	f
Antigen Type	Peptide
Antigen Organism	SYNTHETIC CONSTRUCT
Antigen Sequence	QLSPFPFDL
Antigen Length	9

MHC details:

Item	Info
MHC Chain	c \| NA
MHC Type	MH1
MHC Species	mouse
MHC IMGT details	H2-Ld-2

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	N
B25	B26	B27	B28	B29	B37	B38	B39
Q	T	N	N	H	N	N	M
B40	B41	B42	B43	B44	B45	B46	B47
Y	W	Y	R	Q	D	T	G
B48	B49	B50	B51	B52	B53	B54	B55
H	E	L	R	L	I	Y	Y
B56	B57	B58	B63	B64	B65	B66	B67
S	Y	G	A	G	S	T	E
B68	B69	B70	B71	B72	B74	B75	B76
K	G	D	I	P	D	G	Y
B77	B78	B79	B80	B81	B83	B84	B85
K	A	S	R	P	S	Q	E
B86	B87	B88	B89	B90	B91	B92	B93
N	F	S	L	T	L	E	S
B94	B95	B96	B97	B98	B99	B100	B101
A	T	P	S	Q	T	S	V
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	G	G	G
B114	B115	B116	B117	B118	B119	B120	B121
G	T	L	Y	F	G	A	G
B122	B123	B124	B125	B126	B127
T	R	L	S	V	L

FASTA file

A3	A4	A5	A6	A7	A8	A9	A10
S	V	T	Q	P	D	A	R
A11	A12	A13	A14	A15	A16	A17	A18
V	T	V	S	E	G	A	S
A19	A20	A21	A22	A23	A24	A25	A26
L	Q	L	R	C	K	Y	S
A27	A28	A29	A36	A37	A38	A39	A40
Y	S	A	T	P	Y	L	F
A41	A42	A43	A44	A45	A46	A47	A48
W	Y	V	Q	Y	P	R	Q
A49	A50	A51	A52	A53	A54	A55	A56
G	P	Q	L	L	L	K	Y
A57	A58	A59	A62	A63	A64	A65	A66
Y	S	G	D	P	V	V	Q
A67	A68	A74	A75	A76	A77	A78	A79
G	V	N	G	F	E	A	E
A80	A81	A82	A83	A84	A85	A86	A87
F	S	K	S	N	S	S	F
A88	A89	A90	A91	A92	A93	A94	A95
H	L	R	K	A	S	V	H
A96	A97	A98	A99	A100	A101	A102	A103
R	S	D	S	A	V	Y	F
A104	A105	A106	A107	A108	A109	A113	A114
C	A	V	S	D	P	P	P
A115	A116	A117	A118	A119	A120	A121	A122
L	L	T	F	G	S	G	T
A123	A124	A125	A126
K	V	I	V

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	AVSDPPPLLT	None	10
CDRA2	YYSGDPVV	None	8
CDRA1	YSATPY	None	6

Orientation and docking angles:

Angle	Value
BC2	100.90°
BC1	72.26°
BA	-58.71°
AC2	82.78°
AC1	125.95°
dc	16.62Å
Docking angle	42.51°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
6dfx_JI	101.90°	71.93°	-57.72°	82.26°	125.04°	16.30Å	1.8
6vth_BA	102.74°	71.64°	-57.94°	81.95°	125.13°	17.18Å	2.5
5jzi_ED	102.19°	72.02°	-56.92°	81.33°	126.33°	16.63Å	2.7
2e7l_DA	103.46°	72.58°	-58.01°	82.08°	125.57°	16.65Å	2.8
6vrm_ED	103.62°	72.56°	-58.21°	82.07°	124.91°	17.13Å	3.1

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
3mnw_BA	107.15°	71.13°	-53.34°	82.80°	121.51°	16.47Å	9.4
4ydl_HL	108.56°	70.76°	-54.72°	85.96°	123.49°	15.98Å	9.7

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link