A full list of the group's publications can be found below. Click on the relevant years to see the corresponding papers. You can also download this information as a bibtex file here.
Open all Close all2023) ImmuneBuilder: Deep-Learning models for predicting the structures of immune proteins Communications Biology, 6:575 ( |
2023) Fragment Merging Using a Graph Database Samples Different Catalogue Space than Similarity Search Journal of Chemical Information and Modeling ( |
2023) A Small Step Toward Generalizability: Training a Machine Learning Scoring Function for Structure-Based Virtual Screening Journal of Chemical Information and Modeling ( |
2023) Exploring QSAR Models for Activity-Cliff Prediction Journal of Cheminformatics, 15:47 ( |
2023) Computationally profiling peptide:MHC recognition by T-cell receptors and T-cell receptor-mimetic antibodies Frontiers in Immunology, 13:1080596 ( |
2023) Testing the Limits of SMILES-based De Novo Molecular Generation with Curriculum and Deep Reinforcement Learning Nature Machine Intelligence ( |
2023) Characterisation of the immune repertoire of a humanised transgenic mouse through immunophenotyping and high-throughput sequencing eLife, 12:e81629 ( |
2016) SAbPred: a structure-based antibody prediction server. Nucleic Acids Research, 44(W1):W474-W478 ( |
2016) Modeling Functional Motions of Biological Systems by Customized Natural Moves Biophys. J., 111(4):710-721 ( |
2016) Length-independent structural similarities enrich the antibody CDR canonical class model. MAbs, 8(4):751-760 ( |
2016) Comparison of large networks with sub-sampling strategies Sci. Rep., 6:28955 ( |
2016) ABodyBuilder: automated antibody structure prediction with data-driven accuracy estimation MAbs, 8(7):1259-1268 ( |
2016) Tertiary Element Interaction in HIV-1 TAR J. Chem. Inf. Model., 56(9):1746-1754 ( |
2016) Examining the Conservation of Kinks in Alpha Helices PLoS One, 11(6):e0157553 ( |
2016) The contribution of major histocompatibility complex contacts to the affinity and kinetics of T cell receptor binding Sci. Rep., 6:35326 ( |
2011) Environment specific substitution tables improve membrane protein alignment. Bioinformatics, 27(13):i15-23 ( |
2011) Predicting antibody complementarity determining region structures without classification Mol. Biosyst., 7(12):3327-3334 ( |
2011) Signatures of co-translational folding Biotechnol. J., 6(6):742-751 ( |
2011) Protein interaction networks and their statistical analysis In Handb. Statistical Systems Biology ( |
2011) The imprint of codons on protein structure Biotechnol. J., 6(6):641-649 ( |
2009) Functionally guided alignment of protein interaction networks for module detection Bioinformatics, 25(23):3166-3173 ( |
2009) iMembrane: homology-based membrane-insertion of proteins. Bioinformatics, 25(8):1086-1088 ( |
2009) Proteomic Analysis of Microtubule-associated Proteins during Macrophage Activation Mol. Cell. Proteomics, 8(11):2500-2514 ( |
2009) Reduced amounts and abnormal forms of phospholipase C zeta (PLCzeta) in spermatozoa from infertile men Hum. Reprod., 24(10):2417-2428 ( |
2008) Predicting and validating protein interactions using network structure PLoS Comput. Biol., 4(7):e1000118 ( |
2008) Classifying proteinlike sequences in arbitrary lattice protein models using LatPack HFSP J., 2(6):396-404 ( |
2008) A Microtubule Interactome: Complexes with Roles in Cell Cycle and Mitosis PLoS Biol., 6(4) ( |
2008) An assessment of the uses of homologous interactions Bioinformatics, 24(5):689-695 ( |
2008) Electrostatic and functional analysis of the seven-bladed WD beta-propellers Evol. Bioinform. Online, 4:203-216 ( |
2008) The functional domain grouping of microtubule associated proteins Commun Integr Biol, 1(1):47-50 ( |
2007) Cotranslational protein folding–fact or fiction? Bioinformatics, 23(13):i142-8 ( |
2007) Linking evolution of protein structures through fragments BMC Syst. Biol., 1(Suppl 1):S12 ( |
2007) A statistical approach using network structure in the prediction of protein characteristics Bioinformatics, 23(17):2314-2321 ( |
2007) Using Phylogeny to Improve Genome-Wide Distant Homology Recognition PLoS Comput. Biol., 3(1) ( |
2006) Protein protein interactions, evolutionary rate, abundance and age BMC Bioinformatics, 7(1):128 ( |
2006) Modelling sequential protein folding under kinetic control In Bioinformatics, 22(14) ( |
2005) How old is your fold? Bioinformatics, 21 Suppl 1:i449--458 ( |
2005) Fold usage on genomes and protein fold evolution Proteins, 60(4):690-700 ( |
2004) Solution structure and dynamics of a prototypical chordin-like cysteine-rich repeat (von Willebrand Factor type C module) from collagen IIA J. Biol. Chem., 279(51):53857-53866 ( |