Structure summary for 2ij0

Detailed entry information.

Users have reported errors when performing STCRDab CDR and sequence searches. We are investigating the issue and aim to restore functionality as soon as possible.

Details for 2ij0

Click on any of the tabs below to see the detailed information about the structure.

Structure visualisation

Display options:
Cartoon model
Spacefill model
Wire model
Ball&stick model
Default colouring
Color by B-factor
Color by chain
Color by sec. structure
Color by element
Spin: on off

Structure information

Structural Basis of T Cell Specificity and activation By the Bacterial Superantigen toxic Shock Syndrome toxin-1

Item	Info
PDB	2ij0
Organism	HOMO SAPIENS
Method	X-RAY DIFFRACTION
Resolution	2.25Å
Number of TCRs	2

Paired chains information

This PDB has 2 TCR(s).

C / NA

TCR Details:

Item	Info
VB chain	C
VB IMGT details	TRBV20/TRBJ2
Species	human

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

C

B1	B2	B3	B4	B5	B6	B7	B8
G	A	V	V	S	Q	H	P
B9	B10	B11	B12	B13	B14	B15	B16
S	M	V	I	V	K	S	G
B17	B18	B19	B20	B21	B22	B23	B24
T	S	V	K	I	E	C	R
B25	B26	B27	B28	B29	B36	B37	B38
S	L	D	T	N	I	H	T
B39	B40	B41	B42	B43	B44	B45	B46
M	F	W	Y	R	Q	F	P
B47	B48	B49	B50	B51	B52	B53	B54
K	Q	S	L	M	L	M	A
B55	B56	B57	B58	B59	B63	B64	B65
T	S	H	Q	G	F	N	A
B66	B67	B68	B69	B70	B71	B72	B73
I	Y	E	Q	G	V	V	K
B74	B75	B76	B77	B78	B79	B80	B81
D	K	F	L	I	N	H	A
B83	B84	B85	B86	B87	B88	B89	B90
S	P	T	L	S	T	L	T
B91	B92	B93	B94	B95	B96	B97	B98
V	T	S	A	H	P	E	D
B99	B100	B101	B102	B103	B104	B105	B106
S	G	F	Y	V	C	S	A
B107	B108	B109	B110	B111	B112A	B112	B113
L	A	G	S	G	S	S	T
B114	B115	B116	B117	B118	B119	B120	B121
D	T	Q	Y	F	G	P	G
B122	B123	B124	B125	B126	B127
T	Q	L	T	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	SALAGSGSSTDTQY	None	14
CDRB2	SHQGFNA	None	7
CDRB1	DTNIHT	None	6

E / NA

TCR Details:

Item	Info
VB chain	E
VB IMGT details	TRBV20/TRBJ2
Species	human

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

E

B1	B2	B3	B4	B5	B6	B7	B8
G	A	V	V	S	Q	H	P
B9	B10	B11	B12	B13	B14	B15	B16
S	M	V	I	V	K	S	G
B17	B18	B19	B20	B21	B22	B23	B24
T	S	V	K	I	E	C	R
B25	B26	B27	B28	B29	B36	B37	B38
S	L	D	T	N	I	H	T
B39	B40	B41	B42	B43	B44	B45	B46
M	F	W	Y	R	Q	F	P
B47	B48	B49	B50	B51	B52	B53	B54
K	Q	S	L	M	L	M	A
B55	B56	B57	B58	B59	B63	B64	B65
T	S	H	Q	G	F	N	A
B66	B67	B68	B69	B70	B71	B72	B73
I	Y	E	Q	G	V	V	K
B74	B75	B76	B77	B78	B79	B80	B81
D	K	F	L	I	N	H	A
B83	B84	B85	B86	B87	B88	B89	B90
S	P	T	L	S	T	L	T
B91	B92	B93	B94	B95	B96	B97	B98
V	T	S	A	H	P	E	D
B99	B100	B101	B102	B103	B104	B105	B106
S	G	F	Y	V	C	S	A
B107	B108	B109	B110	B111	B112A	B112	B113
L	A	G	S	G	S	S	T
B114	B115	B116	B117	B118	B119	B120	B121
D	T	Q	Y	F	G	P	G
B122	B123	B124	B125	B126	B127
T	Q	L	T	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	SALAGSGSSTDTQY	None	14
CDRB2	SHQGFNA	None	7
CDRB1	DTNIHT	None	6

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link