Details for 3q5y

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Structure information

V Beta/V Beta Homodimerization-Based Pre-TCR Model Suggested By TCR Beta Crystal Structures

Item	Info
PDB	3q5y
Organism	MUS MUSCULUS
Method	X-RAY DIFFRACTION
Resolution	1.9Å
Number of TCRs	4

Paired chains information

This PDB has 4 TCR(s).

A / NA

TCR Details:

Item	Info
VB chain	A
VB IMGT details	TRBV12/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
D	S	G	V	V	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	H	I	I	K	E	K	G
B17	B18	B19	B20	B21	B22	B23	B24
G	R	S	V	L	T	C	I
B25	B26	B27	B28	B29	B37	B38	B39
P	I	S	G	H	S	N	V
B40	B41	B42	B43	B44	B45	B46	B47
V	W	Y	Q	Q	T	L	G
B48	B49	B50	B51	B52	B53	B54	B55
K	E	L	K	F	L	I	Q
B56	B57	B58	B63	B64	B65	B66	B67
H	Y	E	K	V	E	R	D
B68	B69	B70	B71	B72	B74	B75	B76
K	G	F	L	P	S	R	F
B77	B78	B79	B80	B81	B83	B84	B85
S	V	Q	Q	F	D	D	Y
B86	B87	B88	B89	B90	B91	B92	B93
H	S	E	M	N	M	S	A
B94	B95	B96	B97	B98	B99	B100	B101
L	E	L	E	D	S	A	M
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	S	L	R
B110	B113	B114	B115	B116	B117	B118	B119
W	G	D	E	Q	Y	F	G
B120	B121	B122	B123	B124	B125	B126	B127
P	G	T	R	L	T	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSLRWGDEQY	None	11
CDRB2	HYEKVE	None	6
CDRB1	SGHSN	None	5

B / NA

TCR Details:

Item	Info
VB chain	B
VB IMGT details	TRBV12/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
D	S	G	V	V	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	H	I	I	K	E	K	G
B17	B18	B19	B20	B21	B22	B23	B24
G	R	S	V	L	T	C	I
B25	B26	B27	B28	B29	B37	B38	B39
P	I	S	G	H	S	N	V
B40	B41	B42	B43	B44	B45	B46	B47
V	W	Y	Q	Q	T	L	G
B48	B49	B50	B51	B52	B53	B54	B55
K	E	L	K	F	L	I	Q
B56	B57	B58	B63	B64	B65	B66	B67
H	Y	E	K	V	E	R	D
B68	B69	B70	B71	B72	B74	B75	B76
K	G	F	L	P	S	R	F
B77	B78	B79	B80	B81	B83	B84	B85
S	V	Q	Q	F	D	D	Y
B86	B87	B88	B89	B90	B91	B92	B93
H	S	E	M	N	M	S	A
B94	B95	B96	B97	B98	B99	B100	B101
L	E	L	E	D	S	A	M
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	S	L	R
B110	B113	B114	B115	B116	B117	B118	B119
W	G	D	E	Q	Y	F	G
B120	B121	B122	B123	B124	B125	B126	B127
P	G	T	R	L	T	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSLRWGDEQY	None	11
CDRB2	HYEKVE	None	6
CDRB1	SGHSN	None	5

C / NA

TCR Details:

Item	Info
VB chain	C
VB IMGT details	TRBV12/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
D	S	G	V	V	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	H	I	I	K	E	K	G
B17	B18	B19	B20	B21	B22	B23	B24
G	R	S	V	L	T	C	I
B25	B26	B27	B28	B29	B37	B38	B39
P	I	S	G	H	S	N	V
B40	B41	B42	B43	B44	B45	B46	B47
V	W	Y	Q	Q	T	L	G
B48	B49	B50	B51	B52	B53	B54	B55
K	E	L	K	F	L	I	Q
B56	B57	B58	B63	B64	B65	B66	B67
H	Y	E	K	V	E	R	D
B68	B69	B70	B71	B72	B74	B75	B76
K	G	F	L	P	S	R	F
B77	B78	B79	B80	B81	B83	B84	B85
S	V	Q	Q	F	D	D	Y
B86	B87	B88	B89	B90	B91	B92	B93
H	S	E	M	N	M	S	A
B94	B95	B96	B97	B98	B99	B100	B101
L	E	L	E	D	S	A	M
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	S	L	R
B110	B113	B114	B115	B116	B117	B118	B119
W	G	D	E	Q	Y	F	G
B120	B121	B122	B123	B124	B125	B126	B127
P	G	T	R	L	T	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSLRWGDEQY	None	11
CDRB2	HYEKVE	None	6
CDRB1	SGHSN	None	5

D / NA

TCR Details:

Item	Info
VB chain	D
VB IMGT details	TRBV12/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
D	S	G	V	V	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	H	I	I	K	E	K	G
B17	B18	B19	B20	B21	B22	B23	B24
G	R	S	V	L	T	C	I
B25	B26	B27	B28	B29	B37	B38	B39
P	I	S	G	H	S	N	V
B40	B41	B42	B43	B44	B45	B46	B47
V	W	Y	Q	Q	T	L	G
B48	B49	B50	B51	B52	B53	B54	B55
K	E	L	K	F	L	I	Q
B56	B57	B58	B63	B64	B65	B66	B67
H	Y	E	K	V	E	R	D
B68	B69	B70	B71	B72	B74	B75	B76
K	G	F	L	P	S	R	F
B77	B78	B79	B80	B81	B83	B84	B85
S	V	Q	Q	F	D	D	Y
B86	B87	B88	B89	B90	B91	B92	B93
H	S	E	M	N	M	S	A
B94	B95	B96	B97	B98	B99	B100	B101
L	E	L	E	D	S	A	M
B102	B103	B104	B105	B106	B107	B108	B109
Y	F	C	A	S	S	L	R
B110	B113	B114	B115	B116	B117	B118	B119
W	G	D	E	Q	Y	F	G
B120	B121	B122	B123	B124	B125	B126	B127
P	G	T	R	L	T	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSLRWGDEQY	None	11
CDRB2	HYEKVE	None	6
CDRB1	SGHSN	None	5

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link