Structure summary for 3qjf

Detailed entry information.

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Details for 3qjf

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Structure information

Crystal Structure of the 2B4 TCR

ItemInfo
PDB3qjf
OrganismMUS MUSCULUS
MethodX-RAY DIFFRACTION
Resolution2.4Å
Number of TCRs2
Paired chains information

This PDB has 2 TCR(s).

B / A
TCR Details:
ItemInfo
VB chainB
VA chainA
VB IMGT detailsTRBV26/TRBJ2
VA IMGT detailsTRAV4/TRAJ56
Speciesmouse
Numbered sequence
Chain typeChain IDFASTA/Annotation fileIMGT numbered sequence (Framework/CDR)
VBB FASTA file
B1 B2 B3 B4 B5 B6 B7 B8
M S K V I Q T P
B9 B10 B11 B12 B13 B14 B15 B16
R Y L V K G Q G
B17 B18 B19 B20 B21 B22 B23 B24
Q K A K M R C I
B25 B26 B27 B28 B29 B37 B38 B39
P E K G H P V V
B40 B41 B42 B43 B44 B45 B46 B47
F W Y Q Q N K N
B48 B49 B50 B51 B52 B53 B54 B55
N E F K F L I N
B56 B57 B58 B63 B64 B65 B66 B67
F Q N Q E V L Q
B68 B69 B70 B71 B72 B73 B74 B75
Q I D M T E K R
B76 B77 B78 B79 B80 B81 B83 B84
F S A E C P S N
B85 B86 B87 B88 B89 B90 B91 B92
S P C S L E I Q
B93 B94 B95 B96 B97 B98 B99 B100
S S E A G D S A
B101 B102 B103 B104 B105 B106 B107 B108
L Y L C A S S L
B109 B110 B112 B113 B114 B115 B116 B117
N W S Q D T Q Y
B118 B119 B120 B121 B122 B123 B124 B125
F G P G T R L L
B126 B127
V L
VAA FASTA file
A1 A2 A3 A4 A5 A6 A7 A8
G D Q V E Q S P
A9 A10 A11 A12 A13 A14 A15 A16
S A L S L H E G
A17 A18 A19 A20 A21 A22 A23 A24
T G S A L R C N
A25 A26 A27 A28 A29 A37 A38 A39
F T T T M R A V
A40 A41 A42 A43 A44 A45 A46 A47
Q W F Q Q N S R
A48 A49 A50 A51 A52 A53 A54 A55
G S L I N L F Y
A56 A57 A58 A64 A65 A66 A67 A68
L A S G T K E N
A74 A75 A76 A77 A78 A79 A80 A81
G R L K S T F N
A82 A83 A84 A85 A86 A87 A88 A89
S K E S Y S T L
A90 A91 A92 A93 A94 A95 A96 A97
H I R D A Q L E
A98 A99 A100 A101 A102 A103 A104 A105
D S G T Y F C A
A106 A107 A108 A109 A110 A111 A112 A113
A L R A T G G N
A114 A115 A116 A117 A118 A119 A120 A121
N K L T F G Q G
A122 A123 A124 A125 A126 A127 A128
T V L S V I P
CDR Sequences:
LoopSequencePredicted canonical formCDR Length
CDRB3ASSLNWSQDTQYNone12
CDRB2FQNQEVNone6
CDRB1KGHPVNone5
CDRA3AALRATGGNNKLTNone13
CDRA2LASGTNone5
CDRA1TTMRANone5
Orientation and docking angles:
AngleValue
BC297.61°
BC173.37°
BA-59.38°
AC280.23°
AC1121.63°
dc15.83Å
TCRs with similar orientations:
TCR PDBBC2BC1BAAC2AC1dcTRangle Distance
3qib_DC 96.76° 72.09° -61.86° 81.15° 122.15° 16.00Å 3.1
7t2d_ON 98.58° 72.77° -62.78° 79.21° 121.28° 15.79Å 3.7
3qjh_BA 95.35° 72.28° -61.51° 81.70° 120.10° 16.33Å 3.9
7t2d_TS 98.57° 72.81° -63.12° 78.80° 121.48° 15.70Å 4.2
8gvb_BA 99.60° 73.97° -56.72° 82.64° 122.55° 15.61Å 4.3

D / C
TCR Details:
ItemInfo
VB chainD
VA chainC
VB IMGT detailsTRBV26/TRBJ2
VA IMGT detailsTRAV4/TRAJ56
Speciesmouse
Numbered sequence
Chain typeChain IDFASTA/Annotation fileIMGT numbered sequence (Framework/CDR)
VBD FASTA file
B1 B2 B3 B4 B5 B6 B7 B8
M S K V I Q T P
B9 B10 B11 B12 B13 B14 B15 B16
R Y L V K G Q G
B17 B18 B19 B20 B21 B22 B23 B24
Q K A K M R C I
B25 B26 B27 B28 B29 B37 B38 B39
P E K G H P V V
B40 B41 B42 B43 B44 B45 B46 B47
F W Y Q Q N K N
B48 B49 B50 B51 B52 B53 B54 B55
N E F K F L I N
B56 B57 B58 B63 B64 B65 B66 B67
F Q N Q E V L Q
B68 B69 B70 B71 B72 B73 B74 B75
Q I D M T E K R
B76 B77 B78 B79 B80 B81 B83 B84
F S A E C P S N
B85 B86 B87 B88 B89 B90 B91 B92
S P C S L E I Q
B93 B94 B95 B96 B97 B98 B99 B100
S S E A G D S A
B101 B102 B103 B104 B105 B106 B107 B108
L Y L C A S S L
B109 B110 B112 B113 B114 B115 B116 B117
N W S Q D T Q Y
B118 B119 B120 B121 B122 B123 B124 B125
F G P G T R L L
B126 B127
V L
VAC FASTA file
A1 A2 A3 A4 A5 A6 A7 A8
G D Q V E Q S P
A9 A10 A11 A12 A13 A14 A15 A16
S A L S L H E G
A17 A18 A19 A20 A21 A22 A23 A24
T G S A L R C N
A25 A26 A27 A28 A29 A37 A38 A39
F T T T M R A V
A40 A41 A42 A43 A44 A45 A46 A47
Q W F Q Q N S R
A48 A49 A50 A51 A52 A53 A54 A55
G S L I N L F Y
A56 A57 A58 A64 A65 A66 A67 A68
L A S G T K E N
A74 A75 A76 A77 A78 A79 A80 A81
G R L K S T F N
A82 A83 A84 A85 A86 A87 A88 A89
S K E S Y S T L
A90 A91 A92 A93 A94 A95 A96 A97
H I R D A Q L E
A98 A99 A100 A101 A102 A103 A104 A105
D S G T Y F C A
A106 A107 A108 A109 A110 A111 A112 A113
A L R A T G G N
A114 A115 A116 A117 A118 A119 A120 A121
N K L T F G Q G
A122 A123 A124 A125 A126 A127 A128
T V L S V I P
CDR Sequences:
LoopSequencePredicted canonical formCDR Length
CDRB3ASSLNWSQDTQYNone12
CDRB2FQNQEVNone6
CDRB1KGHPVNone5
CDRA3AALRATGGNNKLTNone13
CDRA2LASGTNone5
CDRA1TTMRANone5
Orientation and docking angles:
AngleValue
BC297.53°
BC173.90°
BA-60.55°
AC280.10°
AC1120.92°
dc15.55Å
TCRs with similar orientations:
TCR PDBBC2BC1BAAC2AC1dcTRangle Distance
7t2d_ON 98.58° 72.77° -62.78° 79.21° 121.28° 15.79Å 2.9
3qib_DC 96.76° 72.09° -61.86° 81.15° 122.15° 16.00Å 2.9
4p2o_DC 97.65° 73.22° -63.70° 79.93° 120.65° 15.65Å 3.2
7t2d_TS 98.57° 72.81° -63.12° 78.80° 121.48° 15.70Å 3.3
6bga_DC 97.05° 72.68° -63.59° 79.78° 120.33° 15.68Å 3.4

Available downloads

Additional links and files for download: see help for more details.

ItemLink
IMGT-numbered structureLink
Non-annotated structure from the PDBLink
Summary file for this TCRLink
Link in the PDBLink