Structure summary for 3qjh

Detailed entry information.

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Details for 3qjh

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Structure information

the Crystal Structure of the 5C.C7 TCR

Item	Info
PDB	3qjh
Organism	MUS MUSCULUS
Method	X-RAY DIFFRACTION
Resolution	1.9Å
Number of TCRs	2

Paired chains information

This PDB has 2 TCR(s).

B / A

TCR Details:

Item	Info
VB chain	B
VA chain	A
VB IMGT details	TRBV26/TRBJ1
VA IMGT details	TRAV4/TRAJ34
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

B

B2	B3	B4	B5	B6	B7	B8	B9
M	K	V	I	Q	T	P	R
B10	B11	B12	B13	B14	B15	B16	B17
Y	L	V	K	G	Q	G	Q
B18	B19	B20	B21	B22	B23	B24	B25
K	A	K	M	R	C	I	P
B26	B27	B28	B29	B37	B38	B39	B40
E	K	G	H	P	V	V	F
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	Q	Q	N	K	N	N
B49	B50	B51	B52	B53	B54	B55	B56
E	F	K	F	L	I	N	F
B57	B58	B63	B64	B65	B66	B67	B68
Q	N	Q	E	V	L	Q	Q
B69	B70	B71	B72	B73	B74	B75	B76
I	D	M	T	E	K	R	F
B77	B78	B79	B80	B81	B83	B84	B85
S	A	E	C	P	S	N	S
B86	B87	B88	B89	B90	B91	B92	B93
P	C	S	L	E	I	Q	S
B94	B95	B96	B97	B98	B99	B100	B101
S	E	A	G	D	S	A	L
B102	B103	B104	B105	B106	B107	B108	B109
Y	L	C	A	S	S	L	N
B110	B112	B113	B114	B115	B116	B117	B118
N	A	N	S	D	Y	T	F
B119	B120	B121	B122	B123	B124	B125	B126
G	S	G	T	R	L	L	V
B127
I

VA

A

A1	A2	A3	A4	A5	A6	A7	A8
G	D	Q	V	E	Q	S	P
A9	A10	A11	A12	A13	A14	A15	A16
S	A	L	S	L	H	E	G
A17	A18	A19	A20	A21	A22	A23	A24
T	G	S	A	L	R	C	N
A25	A26	A27	A28	A29	A37	A38	A39
F	T	T	T	M	R	A	V
A40	A41	A42	A43	A44	A45	A46	A47
Q	W	F	R	K	N	S	R
A48	A49	A50	A51	A52	A53	A54	A55
G	S	L	I	N	L	F	Y
A56	A57	A58	A64	A65	A66	A67	A68
L	A	S	G	T	K	E	N
A74	A75	A76	A77	A78	A79	A80	A81
G	R	L	K	S	A	F	D
A82	A83	A84	A85	A86	A87	A88	A89
S	K	E	R	Y	S	T	L
A90	A91	A92	A93	A94	A95	A96	A97
H	I	R	D	A	Q	L	E
A98	A99	A100	A101	A102	A103	A104	A105
D	S	G	T	Y	F	C	A
A106	A107	A108	A109	A110	A113	A114	A115
A	E	A	S	N	T	N	K
A116	A117	A118	A119	A120	A121	A122	A123
V	V	F	G	T	G	T	R
A124	A125	A126	A127	A128
L	Q	V	L	P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSLNNANSDYT	None	12
CDRB2	FQNQEV	None	6
CDRB1	KGHPV	None	5
CDRA3	AAEASNTNKVV	None	11
CDRA2	LASGT	None	5
CDRA1	TTMRA	None	5

Orientation and docking angles:

Angle	Value
BC2	95.35°
BC1	72.28°
BA	-61.51°
AC2	81.70°
AC1	120.10°
dc	16.33Å

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
3qib_DC	96.76°	72.09°	-61.86°	81.15°	122.15°	16.00Å	2.6
4p2q_JI	93.29°	71.46°	-62.62°	79.72°	121.00°	16.37Å	3.3
4p2r_JI	93.74°	71.57°	-63.19°	79.51°	121.03°	16.35Å	3.4
4p2r_TS	93.90°	70.96°	-62.23°	79.56°	121.61°	16.59Å	3.4
4p2q_TS	93.51°	71.24°	-62.08°	79.42°	121.27°	16.63Å	3.4

D / C

TCR Details:

Item	Info
VB chain	D
VA chain	C
VB IMGT details	TRBV26/TRBJ1
VA IMGT details	TRAV4/TRAJ34
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

VB

D

B2	B3	B4	B5	B6	B7	B8	B9
M	K	V	I	Q	T	P	R
B10	B11	B12	B13	B14	B15	B16	B17
Y	L	V	K	G	Q	G	Q
B18	B19	B20	B21	B22	B23	B24	B25
K	A	K	M	R	C	I	P
B26	B27	B28	B29	B37	B38	B39	B40
E	K	G	H	P	V	V	F
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	Q	Q	N	K	N	N
B49	B50	B51	B52	B53	B54	B55	B56
E	F	K	F	L	I	N	F
B57	B58	B63	B64	B65	B66	B67	B68
Q	N	Q	E	V	L	Q	Q
B69	B70	B71	B72	B73	B74	B75	B76
I	D	M	T	E	K	R	F
B77	B78	B79	B80	B81	B83	B84	B85
S	A	E	C	P	S	N	S
B86	B87	B88	B89	B90	B91	B92	B93
P	C	S	L	E	I	Q	S
B94	B95	B96	B97	B98	B99	B100	B101
S	E	A	G	D	S	A	L
B102	B103	B104	B105	B106	B107	B108	B109
Y	L	C	A	S	S	L	N
B110	B112	B113	B114	B115	B116	B117	B118
N	A	N	S	D	Y	T	F
B119	B120	B121	B122	B123	B124	B125	B126
G	S	G	T	R	L	L	V
B127
I

VA

C

A1	A2	A3	A4	A5	A6	A7	A8
G	D	Q	V	E	Q	S	P
A9	A10	A11	A12	A13	A14	A15	A16
S	A	L	S	L	H	E	G
A17	A18	A19	A20	A21	A22	A23	A24
T	G	S	A	L	R	C	N
A25	A26	A27	A28	A29	A37	A38	A39
F	T	T	T	M	R	A	V
A40	A41	A42	A43	A44	A45	A46	A47
Q	W	F	R	K	N	S	R
A48	A49	A50	A51	A52	A53	A54	A55
G	S	L	I	N	L	F	Y
A56	A57	A58	A64	A65	A66	A67	A68
L	A	S	G	T	K	E	N
A74	A75	A76	A77	A78	A79	A80	A81
G	R	L	K	S	A	F	D
A82	A83	A84	A85	A86	A87	A88	A89
S	K	E	R	Y	S	T	L
A90	A91	A92	A93	A94	A95	A96	A97
H	I	R	D	A	Q	L	E
A98	A99	A100	A101	A102	A103	A104	A105
D	S	G	T	Y	F	C	A
A106	A107	A108	A109	A110	A113	A114	A115
A	E	A	S	N	T	N	K
A116	A117	A118	A119	A120	A121	A122	A123
V	V	F	G	T	G	T	R
A124	A125	A126	A127	A128
L	Q	V	L	P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSLNNANSDYT	None	12
CDRB2	FQNQEV	None	6
CDRB1	KGHPV	None	5
CDRA3	AAEASNTNKVV	None	11
CDRA2	LASGT	None	5
CDRA1	TTMRA	None	5

Orientation and docking angles:

Angle	Value
BC2	95.16°
BC1	71.23°
BA	-62.76°
AC2	80.66°
AC1	120.31°
dc	16.37Å

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
4p2r_JI	93.74°	71.57°	-63.19°	79.51°	121.03°	16.35Å	2.0
4p2r_TS	93.90°	70.96°	-62.23°	79.56°	121.61°	16.59Å	2.2
4p2q_JI	93.29°	71.46°	-62.62°	79.72°	121.00°	16.37Å	2.2
4p2q_TS	93.51°	71.24°	-62.08°	79.42°	121.27°	16.63Å	2.4
4p2r_ON	93.64°	71.61°	-63.23°	78.69°	120.05°	16.45Å	2.6

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link