Structure summary for 4gg8

Detailed entry information.

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Details for 4gg8

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Structure information

Immune Receptor

ItemInfo
PDB4gg8
OrganismHOMO SAPIENS
MethodX-RAY DIFFRACTION
Resolution3.2Å
Number of TCRs2
Paired chains information

This PDB has 2 TCR(s).

B / A
TCR Details:
ItemInfo
VB chainB
VA chainA
VB IMGT detailsTRBV9/TRBJ2
VA IMGT detailsTRAV26/TRAJ45
Specieshuman
Numbered sequence
Chain typeChain IDFASTA/Annotation fileIMGT numbered sequence (Framework/CDR)
VBB FASTA file
B1 B2 B3 B4 B5 B6 B7 B8
D S G V T Q T P
B9 B10 B11 B12 B13 B14 B15 B16
K H L I T A T G
B17 B18 B19 B20 B21 B22 B23 B24
Q R V T L R C S
B25 B26 B27 B28 B29 B37 B38 B39
P R S G D L S V
B40 B41 B42 B43 B44 B45 B46 B47
Y W Y Q Q S L D
B48 B49 B50 B51 B52 B53 B54 B55
Q G L Q F L I Q
B56 B57 B58 B63 B64 B65 B66 B67
Y Y N G E E R A
B68 B69 B70 B71 B72 B74 B75 B76
K G N I L E R F
B77 B78 B79 B80 B81 B83 B84 B85
S A Q Q F P D L
B86 B87 B88 B89 B90 B91 B92 B93
H S E L N L S S
B94 B95 B96 B97 B98 B99 B100 B101
L E L G D S A L
B102 B103 B104 B105 B106 B107 B108 B109
Y F C A S S V A
B110 B111 B112A B112 B113 B114 B115 B116
V S A G T Y E Q
B117 B118 B119 B120 B121 B122 B123 B124
Y F G P G T R L
B125 B126 B127
T V T
VAA FASTA file
A1 A2 A3 A4 A5 A6 A8 A9
D A K T T Q P N
A10 A11 A12 A13 A14 A15 A16 A17
S M E S N E E E
A18 A19 A20 A21 A22 A23 A24 A25
P V H L P C N H
A26 A27 A28 A29 A30 A36 A37 A38
S T I S G T D Y
A39 A40 A41 A42 A43 A44 A45 A46
I H W Y R Q L P
A47 A48 A49 A50 A51 A52 A53 A54
S Q G P E Y V I
A55 A56 A57 A58 A64 A65 A66 A67
H G L T S N V N
A68 A74 A75 A76 A77 A78 A79 A80
N R M A S L A I
A81 A82 A83 A84 A85 A86 A87 A88
A E D R K S S T
A89 A90 A91 A92 A93 A94 A95 A96
L I L H R A T L
A97 A98 A99 A100 A101 A102 A103 A104
R D A A V Y Y C
A105 A106 A107 A108 A109 A110 A111 A112
I L R D G R G G
A113 A114 A115 A116 A117 A118 A119 A120
A D G L T F G K
A121 A122 A123 A124 A125 A126 A127 A128
G T H L I I Q P
CDR Sequences:
LoopSequencePredicted canonical formCDR Length
CDRB3ASSVAVSAGTYEQYNone14
CDRB2YYNGEENone6
CDRB1SGDLSNone5
CDRA3ILRDGRGGADGLTNone13
CDRA2GLTSNNone5
CDRA1TISGTDYNone7
Orientation and docking angles:
AngleValue
BC2107.54°
BC170.62°
BA-50.55°
AC294.37°
AC1132.63°
dc17.48Å
TCRs with similar orientations:
TCR PDBBC2BC1BAAC2AC1dcTRangle Distance
7dzm_DE 104.92° 71.39° -51.44° 93.90° 130.79° 17.55Å 3.4
7dzn_DE 104.31° 71.30° -51.03° 94.04° 131.03° 17.63Å 3.7
8vd0_ED 108.62° 70.83° -54.02° 95.19° 131.05° 17.35Å 4.1
8vd0_JI 108.28° 71.33° -55.14° 93.60° 129.38° 17.32Å 5.8
3dx9_BA 104.77° 70.30° -51.98° 90.98° 128.49° 17.31Å 6.2

F / E
TCR Details:
ItemInfo
VB chainF
VA chainE
VB IMGT detailsTRBV9/TRBJ2
VA IMGT detailsTRAV26/TRAJ45
Specieshuman
Numbered sequence
Chain typeChain IDFASTA/Annotation fileIMGT numbered sequence (Framework/CDR)
VBF FASTA file
B1 B2 B3 B4 B5 B6 B7 B8
D S G V T Q T P
B9 B10 B11 B12 B13 B14 B15 B16
K H L I T A T G
B17 B18 B19 B20 B21 B22 B23 B24
Q R V T L R C S
B25 B26 B27 B28 B29 B37 B38 B39
P R S G D L S V
B40 B41 B42 B43 B44 B45 B46 B47
Y W Y Q Q S L D
B48 B49 B50 B51 B52 B53 B54 B55
Q G L Q F L I Q
B56 B57 B58 B63 B64 B65 B66 B67
Y Y N G E E R A
B68 B69 B70 B71 B72 B74 B75 B76
K G N I L E R F
B77 B78 B79 B80 B81 B83 B84 B85
S A Q Q F P D L
B86 B87 B88 B89 B90 B91 B92 B93
H S E L N L S S
B94 B95 B96 B97 B98 B99 B100 B101
L E L G D S A L
B102 B103 B104 B105 B106 B107 B108 B109
Y F C A S S V A
B110 B111 B112A B112 B113 B114 B115 B116
V S A G T Y E Q
B117 B118 B119 B120 B121 B122 B123 B124
Y F G P G T R L
B125 B126 B127
T V T
VAE FASTA file
A1 A2 A3 A4 A5 A6 A8 A9
D A K T T Q P N
A10 A11 A12 A13 A14 A15 A16 A17
S M E S N E E E
A18 A19 A20 A21 A22 A23 A24 A25
P V H L P C N H
A26 A27 A28 A29 A30 A36 A37 A38
S T I S G T D Y
A39 A40 A41 A42 A43 A44 A45 A46
I H W Y R Q L P
A47 A48 A49 A50 A51 A52 A53 A54
S Q G P E Y V I
A55 A56 A57 A58 A64 A65 A66 A67
H G L T S N V N
A68 A74 A75 A76 A77 A78 A79 A80
N R M A S L A I
A81 A82 A83 A84 A85 A86 A87 A88
A E D R K S S T
A89 A90 A91 A92 A93 A94 A95 A96
L I L H R A T L
A97 A98 A99 A100 A101 A102 A103 A104
R D A A V Y Y C
A105 A106 A107 A108 A109 A110 A111 A112
I L R D G R G G
A113 A114 A115 A116 A117 A118 A119 A120
A D G L T F G K
A121 A122 A123 A124 A125 A126 A127 A128
G T H L I I Q P
CDR Sequences:
LoopSequencePredicted canonical formCDR Length
CDRB3ASSVAVSAGTYEQYNone14
CDRB2YYNGEENone6
CDRB1SGDLSNone5
CDRA3ILRDGRGGADGLTNone13
CDRA2GLTSNNone5
CDRA1TISGTDYNone7
Orientation and docking angles:
AngleValue
BC2107.56°
BC170.66°
BA-50.66°
AC294.18°
AC1132.57°
dc17.45Å
TCRs with similar orientations:
TCR PDBBC2BC1BAAC2AC1dcTRangle Distance
7dzm_DE 104.92° 71.39° -51.44° 93.90° 130.79° 17.55Å 3.4
7dzn_DE 104.31° 71.30° -51.03° 94.04° 131.03° 17.63Å 3.7
8vd0_ED 108.62° 70.83° -54.02° 95.19° 131.05° 17.35Å 4.0
8vd0_JI 108.28° 71.33° -55.14° 93.60° 129.38° 17.32Å 5.6
3dx9_BA 104.77° 70.30° -51.98° 90.98° 128.49° 17.31Å 6.0

Available downloads

Additional links and files for download: see help for more details.

ItemLink
IMGT-numbered structureLink
Non-annotated structure from the PDBLink
Summary file for this TCRLink
Link in the PDBLink