TCR Details:

Item	Info
VB chain	D
VA chain	C
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV11/TRAJ18
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	A
Antigen Type	Carbohydrate
Antigen Organism	MUS MUSCULUS
Antigen name	N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE
Antigen residue	AGH

MHC details:

Item	Info
MHC Chain	A | B
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	D	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 E A A V T Q S P B9 B10 B11 B12 B13 B14 B15 B16 R N K V A V T G B17 B18 B19 B20 B21 B22 B23 B24 G K V T L S C N B25 B26 B27 B28 B29 B37 B38 B39 Q T N N H N N M B40 B41 B42 B43 B44 B45 B46 B47 Y W Y R Q D T G B48 B49 B50 B51 B52 B53 B54 B55 H G L R L I H Y B56 B57 B58 B63 B64 B65 B66 B67 S Y G A G S T E B68 B69 B70 B71 B72 B74 B75 B76 K G D I P D G Y B77 B78 B79 B80 B81 B83 B84 B85 K A S R P S Q E B86 B87 B88 B89 B90 B91 B92 B93 N F S L I L E L B94 B95 B96 B97 B98 B99 B100 B101 A T P S Q T S V B102 B103 B104 B105 B106 B107 B108 B109 Y F C A S G D E B113 B114 B115 B116 B117 B118 B119 B120 G Y T Q Y F G P B121 B122 B123 B124 B125 B126 B127 G T R L L V L
VA	C	FASTA file	A2 A3 A4 A5 A6 A7 A8 A9 T Q V E Q S P Q A10 A11 A12 A13 A14 A15 A16 A17 S L V V R Q G E A18 A19 A20 A21 A22 A23 A24 A25 N S V L Q C N Y A26 A27 A28 A29 A36 A37 A38 A39 S V T P D N H L A40 A41 A42 A43 A44 A45 A46 A47 R W F K Q D T G A48 A49 A50 A51 A52 A53 A54 A55 K G L V S L T V A56 A57 A58 A59 A63 A64 A65 A66 L V D Q K D K T A67 A68 A74 A75 A76 A77 A78 A79 S N G R Y S A T A80 A81 A82 A83 A84 A85 A86 A87 L D K D A K H S A88 A89 A90 A91 A92 A93 A94 A95 T L H I T A T L A96 A97 A98 A99 A100 A101 A102 A103 L D D T A T Y I A104 A105 A106 A107 A108 A109 A110 A111 C V V G D R G S A112 A113 A114 A115 A116 A117 A118 A119 A L G R L H F G A120 A121 A122 A123 A124 A125 A126 A127 A G T Q L I V I A128 P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGDEGYTQY	None	10
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	VVGDRGSALGRLH	None	13
CDRA2	LVDQKDK	A2-7-C	7
CDRA1	VTPDNH	None	6

Orientation and docking angles:

Angle	Value
BC2	99.14°
BC1	78.60°
BA	-58.66°
AC2	79.14°
AC1	122.43°
dc	16.12Å
Docking angle	26.93°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
6bnl_HG	99.39°	78.38°	-58.31°	78.98°	122.27°	16.23Å	0.5
6cwe_DC	99.42°	78.78°	-58.54°	78.89°	122.20°	16.04Å	0.5
4y4h_HG	98.91°	78.34°	-58.46°	79.04°	122.60°	16.35Å	0.5
6mja_DC	99.40°	78.37°	-58.78°	78.90°	122.84°	16.17Å	0.6
4zak_DC	99.42°	78.31°	-58.57°	79.31°	122.84°	16.13Å	0.6

TCR Details:

Item	Info
VB chain	H
VA chain	G
VB IMGT details	TRBV13/TRBJ2
VA IMGT details	TRAV11/TRAJ18
Species	mouse

Antigen Details:

Item	Info
Antigen Chain	E
Antigen Type	Carbohydrate
Antigen Organism	MUS MUSCULUS
Antigen name	N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE
Antigen residue	AGH

MHC details:

Item	Info
MHC Chain	E | F
MHC Type	CD1
MHC Species	mouse
MHC IMGT details	CD1D1*01

Numbered sequence

Chain type	Chain ID	FASTA/Annotation file	IMGT numbered sequence (Framework/CDR)
VB	H	FASTA file	B1 B2 B3 B4 B5 B6 B7 B8 E A A V T Q S P B9 B10 B11 B12 B13 B14 B15 B16 R N K V A V T G B17 B18 B19 B20 B21 B22 B23 B24 G K V T L S C N B25 B26 B27 B28 B29 B37 B38 B39 Q T N N H N N M B40 B41 B42 B43 B44 B45 B46 B47 Y W Y R Q D T G B48 B49 B50 B51 B52 B53 B54 B55 H G L R L I H Y B56 B57 B58 B63 B64 B65 B66 B67 S Y G A G S T E B68 B69 B70 B71 B72 B74 B75 B76 K G D I P D G Y B77 B78 B79 B80 B81 B83 B84 B85 K A S R P S Q E B86 B87 B88 B89 B90 B91 B92 B93 N F S L I L E L B94 B95 B96 B97 B98 B99 B100 B101 A T P S Q T S V B102 B103 B104 B105 B106 B107 B108 B109 Y F C A S G D E B113 B114 B115 B116 B117 B118 B119 B120 G Y T Q Y F G P B121 B122 B123 B124 B125 B126 B127 G T R L L V L
VA	G	FASTA file	A2 A3 A4 A5 A6 A7 A8 A9 T Q V E Q S P Q A10 A11 A12 A13 A14 A15 A16 A17 S L V V R Q G E A18 A19 A20 A21 A22 A23 A24 A25 N S V L Q C N Y A26 A27 A28 A29 A36 A37 A38 A39 S V T P D N H L A40 A41 A42 A43 A44 A45 A46 A47 R W F K Q D T G A48 A49 A50 A51 A52 A53 A54 A55 K G L V S L T V A56 A57 A58 A59 A63 A64 A65 A66 L V D Q K D K T A67 A68 A74 A75 A76 A77 A78 A79 S N G R Y S A T A80 A81 A82 A83 A84 A85 A86 A87 L D K D A K H S A88 A89 A90 A91 A92 A93 A94 A95 T L H I T A T L A96 A97 A98 A99 A100 A101 A102 A103 L D D T A T Y I A104 A105 A106 A107 A108 A109 A110 A111 C V V G D R G S A112 A113 A114 A115 A116 A117 A118 A119 A L G R L H F G A120 A121 A122 A123 A124 A125 A126 A127 A G T Q L I V I A128 P

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGDEGYTQY	None	10
CDRB2	SYGAGS	None	6
CDRB1	NNHNN	None	5
CDRA3	VVGDRGSALGRLH	None	13
CDRA2	LVDQKDK	A2-7-C	7
CDRA1	VTPDNH	None	6

Orientation and docking angles:

Angle	Value
BC2	99.22°
BC1	78.94°
BA	-57.78°
AC2	79.39°
AC1	122.30°
dc	16.15Å
Docking angle	25.91°

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
6cxa_DC	99.21°	79.22°	-57.94°	79.35°	122.54°	16.06Å	0.4
4y4f_DC	98.87°	78.73°	-57.84°	79.54°	122.30°	16.12Å	0.4
6cw9_DC	99.40°	78.65°	-57.87°	79.12°	122.47°	16.13Å	0.5
6cwb_DC	99.58°	78.71°	-57.99°	79.33°	122.49°	16.11Å	0.5
6cw6_DC	99.52°	79.00°	-57.89°	79.45°	122.60°	16.04Å	0.5