Details for 6c68

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Structure information

MHC-independent T Cell Receptor a11

Item	Info
PDB	6c68
Organism	MUS MUSCULUS
Method	X-RAY DIFFRACTION
Resolution	2.59Å
Number of TCRs	2

Paired chains information

This PDB has 2 TCR(s).

B / A

TCR Details:

Item	Info
VB chain	B
VA chain	A
VB IMGT details	TRBV13/TRBJ1
VA IMGT details	TRAV12/TRAJ40
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B2	B3	B4	B5	B6	B7	B8	B9
M	A	V	T	Q	S	P	R
B10	B11	B12	B13	B14	B15	B16	B17
S	K	V	A	V	T	G	G
B18	B19	B20	B21	B22	B23	B24	B25
K	V	T	L	S	C	H	Q
B26	B27	B28	B29	B37	B38	B39	B40
T	N	N	H	D	Y	M	Y
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	R	Q	D	T	G	H
B49	B50	B51	B52	B53	B54	B55	B56
G	L	R	L	I	H	Y	S
B57	B58	B63	B64	B65	B66	B67	B68
Y	V	A	D	S	T	E	K
B69	B70	B71	B72	B74	B75	B76	B77
G	D	I	P	D	G	Y	K
B78	B79	B80	B81	B83	B84	B85	B86
A	S	R	P	S	Q	E	N
B87	B88	B89	B90	B91	B92	B93	B94
F	S	L	I	L	E	L	A
B95	B96	B97	B98	B99	B100	B101	B102
S	L	S	Q	T	A	V	Y
B103	B104	B105	B106	B107	B108	B109	B113
F	C	A	S	S	Q	T	N
B114	B115	B116	B117	B118	B119	B120	B121
S	D	Y	T	F	G	S	G
B122	B123	B124	B125	B126	B127
T	R	L	L	V	I

FASTA file

A1	A2	A3	A4	A5	A6	A7	A8
M	D	S	V	T	Q	T	E
A9	A10	A11	A12	A13	A14	A15	A16
G	L	V	T	V	T	E	G
A17	A18	A19	A20	A21	A22	A23	A24
L	P	V	M	L	N	C	T
A25	A26	A27	A28	A29	A30	A36	A37
Y	Q	T	A	Y	S	D	V
A38	A39	A40	A41	A42	A43	A44	A45
A	F	F	W	Y	V	Q	Y
A46	A47	A48	A49	A50	A51	A52	A53
L	N	E	A	P	K	L	L
A54	A55	A56	A57	A58	A59	A63	A64
L	R	S	S	T	D	N	K
A65	A66	A67	A68	A74	A75	A76	A77
R	T	E	H	Q	G	F	H
A78	A79	A80	A81	A82	A83	A84	A85
A	T	L	H	K	S	S	S
A86	A87	A88	A89	A90	A91	A92	A93
S	F	H	L	Q	K	S	S
A94	A95	A96	A97	A98	A99	A100	A101
V	Q	L	S	D	S	A	L
A102	A103	A104	A105	A106	A107	A108	A109
Y	Y	C	A	L	S	P	H
A110	A111	A112	A113	A114	A115	A116	A117
N	T	G	N	Y	K	Y	V
A118	A119	A120	A121	A122	A123	A124	A125
F	G	A	G	T	R	L	K
A126	A127
V	I

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSQTNSDYT	None	10
CDRB2	SYVADS	None	6
CDRB1	NNHDY	None	5
CDRA3	ALSPHNTGNYKYV	None	13
CDRA2	SSTDNKR	None	7
CDRA1	TAYSDVA	None	7

Orientation and docking angles:

Angle	Value
BC2	104.25°
BC1	73.60°
BA	-59.06°
AC2	74.52°
AC1	125.37°
dc	16.75Å

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
5wlg_JI	103.68°	71.72°	-59.80°	75.45°	123.46°	16.54Å	3.0
7pb2_JI	103.13°	73.39°	-57.79°	76.91°	125.64°	16.86Å	3.0
2p1y_Ca	103.29°	71.37°	-59.08°	76.12°	126.47°	17.20Å	3.1
2p1y_Ac	103.78°	71.14°	-59.22°	76.19°	126.48°	17.18Å	3.2
6dfv_BA	105.57°	72.04°	-60.73°	73.52°	127.09°	16.69Å	3.3

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
4yfl_FI	106.92°	71.36°	-64.48°	73.60°	120.95°	15.85Å	7.9
4x4x_CD	112.33°	72.96°	-60.80°	78.66°	125.88°	15.67Å	9.3

D / C

TCR Details:

Item	Info
VB chain	D
VA chain	C
VB IMGT details	TRBV13/TRBJ1
VA IMGT details	TRAV12/TRAJ40
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B2	B3	B4	B5	B6	B7	B8	B9
M	A	V	T	Q	S	P	R
B10	B11	B12	B13	B14	B15	B16	B17
S	K	V	A	V	T	G	G
B18	B19	B20	B21	B22	B23	B24	B25
K	V	T	L	S	C	H	Q
B26	B27	B28	B29	B37	B38	B39	B40
T	N	N	H	D	Y	M	Y
B41	B42	B43	B44	B45	B46	B47	B48
W	Y	R	Q	D	T	G	H
B49	B50	B51	B52	B53	B54	B55	B56
G	L	R	L	I	H	Y	S
B57	B58	B63	B64	B65	B66	B67	B68
Y	V	A	D	S	T	E	K
B69	B70	B71	B72	B74	B75	B76	B77
G	D	I	P	D	G	Y	K
B78	B79	B80	B81	B83	B84	B85	B86
A	S	R	P	S	Q	E	N
B87	B88	B89	B90	B91	B92	B93	B94
F	S	L	I	L	E	L	A
B95	B96	B97	B98	B99	B100	B101	B102
S	L	S	Q	T	A	V	Y
B103	B104	B105	B106	B107	B108	B109	B113
F	C	A	S	S	Q	T	N
B114	B115	B116	B117	B118	B119	B120	B121
S	D	Y	T	F	G	S	G
B122	B123	B124	B125	B126	B127
T	R	L	L	V	I

FASTA file

A1	A2	A3	A4	A5	A6	A7	A8
M	D	S	V	T	Q	T	E
A9	A10	A11	A12	A13	A14	A15	A16
G	L	V	T	V	T	E	G
A17	A18	A19	A20	A21	A22	A23	A24
L	P	V	M	L	N	C	T
A25	A26	A27	A28	A29	A30	A36	A37
Y	Q	T	A	Y	S	D	V
A38	A39	A40	A41	A42	A43	A44	A45
A	F	F	W	Y	V	Q	Y
A46	A47	A48	A49	A50	A51	A52	A53
L	N	E	A	P	K	L	L
A54	A55	A56	A57	A58	A59	A63	A64
L	R	S	S	T	D	N	K
A65	A66	A67	A68	A74	A75	A76	A77
R	T	E	H	Q	G	F	H
A78	A79	A80	A81	A82	A83	A84	A85
A	T	L	H	K	S	S	S
A86	A87	A88	A89	A90	A91	A92	A93
S	F	H	L	Q	K	S	S
A94	A95	A96	A97	A98	A99	A100	A101
V	Q	L	S	D	S	A	L
A102	A103	A104	A105	A106	A107	A108	A109
Y	Y	C	A	L	S	P	H
A110	A111	A112	A113	A114	A115	A116	A117
N	T	G	N	Y	K	Y	V
A118	A119	A120	A121	A122	A123	A124	A125
F	G	A	G	T	R	L	K
A126	A127
V	I

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASSQTNSDYT	None	10
CDRB2	SYVADS	None	6
CDRB1	NNHDY	None	5
CDRA3	ALSPHNTGNYKYV	None	13
CDRA2	SSTDNKR	None	7
CDRA1	TAYSDVA	None	7

Orientation and docking angles:

Angle	Value
BC2	102.80°
BC1	73.30°
BA	-62.91°
AC2	75.73°
AC1	125.94°
dc	16.59Å

TCRs with similar orientations:

TCR PDB	BC2	BC1	BA	AC2	AC1	dc	TRangle Distance
3skn_DC	103.73°	73.20°	-63.62°	75.26°	124.51°	17.21Å	2.0
6uz1_ED	103.15°	73.02°	-61.74°	74.37°	123.46°	16.24Å	3.1
7zt7_ED	103.17°	72.09°	-63.37°	78.78°	124.55°	16.63Å	3.6
3arb_DC	100.68°	74.60°	-63.18°	76.76°	123.53°	16.56Å	3.6
7zt2_ED	103.28°	71.69°	-63.23°	78.73°	124.60°	16.68Å	3.7

Antibodies with similar orientations:

Antibody PDB	HC2	HC1	HL	LC2	LC1	dc	ABangle Distance
4yfl_FI	106.92°	71.36°	-64.48°	73.60°	120.95°	15.85Å	7.3
1n4x_HL	110.31°	76.00°	-65.51°	77.43°	122.43°	15.84Å	9.3
5jue_HL	106.42°	70.98°	-68.16°	76.41°	119.66°	16.06Å	9.3
4uim_AB	109.49°	71.42°	-65.63°	76.99°	119.77°	15.95Å	9.8

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link