Structure Viewer: 5nml

> Structure details

Nb36 Ser85Cys with Hg Bound

PDB	5nml
Species	LAMA GLAMA
Method	X-RAY DIFFRACTION
Resolution	2.5Å
Number of Fvs	10
In complex	True
Light chain type
Has constant region	False

> Fv information

This PDB has 10 Fv(s).

Fv Details
Heavy chain	F
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	H
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	D
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	E
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	I
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	A
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	J
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	B
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	C
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Fv Details
Heavy chain	G
Light chain
Heavy subgroup	IGHV1
Light subgroup
Species	LAMA GLAMA
In complex?	True
scFv?	False
Has constant domain?	False

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	V	E	S	G	G	G	L	V	Q	A	G	G	S	L	R	L	S	C	V	V	S	G	S	A	V	S	D	Y	A	M	G	W	Y	R	Q	A	P	G	K	Q	R	E	L	V	A	A	I	Y	N	S	G	R	T	N	Y	V	D	S	V	K	G	R	F	T	I	S	K	D	N	A	K	K	T	V	Y	L	Q	M	N	C	L	K	P	E	D	T	A	D	Y	F	C	N	L	L	G	A	T	T	M	S	N	A	V	W	G	Q	G	T	Q	V	T	V	S	S

Antigen Details
Antigen chains
Antigen type
Antigen name
Antigen species	SYNTHETIC CONSTRUCT
Antigen sequence

CDR Sequences (chothia definition)
CDRH1	GSAVSDY
CDRH2	YNSGR
CDRH3	LGATTMSNAV

Additional links and files for download: see help for more details.

Chothia-numbered structure	Download
IMGT-numbered structure	Download
Non-annotated structure from the PDB	Download
Summary file for this antibody	Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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