Structure Viewer: 5w1k

> Structure details

Junv Gp1 Cr1-10 Fab Cr1-28 Fab complex

PDB	5w1k
Species	HOMO SAPIENS
Method	X-RAY DIFFRACTION
Resolution	3.99Å
Number of Fvs	8
In complex	True
Light chain type	Kappa
Has constant region	True

> Fv information

This PDB has 8 Fv(s).

Fv Details
Heavy chain	L
Light chain	K
Heavy subgroup	IGHV3
Light subgroup	IGKV1
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	100I	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	V	Q	L	V	E	S	G	G	G	V	V	Q	P	G	R	S	L	R	L	S	C	A	A	S	G	F	T	F	S	S	S	A	M	H	W	V	R	Q	A	P	G	K	G	L	E	W	V	A	V	I	W	S	D	G	S	N	E	N	Y	A	D	S	V	K	G	R	F	T	I	S	R	D	N	S	K	N	T	L	Y	L	Q	M	S	S	L	R	A	E	D	T	A	V	Y	Y	C	A	T	D	K	T	Y	V	S	G	Y	T	S	T	W	Y	Y	F	N	Y	W	G	Q	G	T	L	V	T	V	S	G

Light chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	96	97	98	99	100	101	102	103	104	105	106	107
I	Q	M	T	Q	S	P	S	T	L	S	A	S	V	G	D	R	V	T	I	T	C	R	A	S	Q	S	I	D	N	W	L	A	W	Y	Q	Q	K	P	G	K	A	P	K	L	L	I	Y	T	A	S	R	L	E	S	G	V	P	S	R	F	S	G	S	G	S	G	T	E	F	T	L	T	I	S	S	L	Q	P	D	D	F	A	T	Y	Y	C	Q	H	R	T	F	G	Q	G	T	K	V	E	I	K

Antigen Details
Antigen chains	J
Antigen type	protein
Antigen name	pre-glycoprotein polyprotein gp complex
Antigen species	JUNIN MAMMARENAVIRUS
Antigen sequence	DLPLLCTLNKSHLYIKGGNASFKISFDDIAVLLPEYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWYLDPPFLCRNRTKTEGFIFQVNTSKTGINENYAKKFKTGMHHLYREYPDSCLDGKLCLMKAQPTSWPLQCPL

CDR Sequences (chothia definition)
CDRH1	GFTFSSS
CDRH2	WSDGSN
CDRH3	DKTYVSGYTSTWYYFNY
CDRL1	RASQSIDNWLA
CDRL2	TASRLES
CDRL3	QHRT

Orientation Angles (from ABangle)
HL	-57.89°
HC1	71.9°
HC2	122.07°
LC1	120.74°
LC2	84.22°
dc	16.56Å

Fv Details
Heavy chain	B
Light chain	A
Heavy subgroup	IGHV3
Light subgroup	IGKV1
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	100I	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	V	Q	L	V	E	S	G	G	G	V	V	Q	P	G	R	S	L	R	L	S	C	A	A	S	G	F	T	F	S	S	S	A	M	H	W	V	R	Q	A	P	G	K	G	L	E	W	V	A	V	I	W	S	D	G	S	N	E	N	Y	A	D	S	V	K	G	R	F	T	I	S	R	D	N	S	K	N	T	L	Y	L	Q	M	S	S	L	R	A	E	D	T	A	V	Y	Y	C	A	T	D	K	T	Y	V	S	G	Y	T	S	T	W	Y	Y	F	N	Y	W	G	Q	G	T	L	V	T	V	S	G

Light chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	96	97	98	99	100	101	102	103	104	105	106	107
I	Q	M	T	Q	S	P	S	T	L	S	A	S	V	G	D	R	V	T	I	T	C	R	A	S	Q	S	I	D	N	W	L	A	W	Y	Q	Q	K	P	G	K	A	P	K	L	L	I	Y	T	A	S	R	L	E	S	G	V	P	S	R	F	S	G	S	G	S	G	T	E	F	T	L	T	I	S	S	L	Q	P	D	D	F	A	T	Y	Y	C	Q	H	R	T	F	G	Q	G	T	K	V	E	I	K

Antigen Details
Antigen chains	P
Antigen type	protein
Antigen name	pre-glycoprotein polyprotein gp complex
Antigen species	JUNIN MAMMARENAVIRUS
Antigen sequence	DLPLLCTLNKSHLYIKGGNASFKISFDDIAVLLPEYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWYLDPPFLCRNRTKTEGFIFQVNTSKTGINENYAKKFKTGMHHLYREYPDSCLDGKLCLMKAQPTSWPLQCPL

CDR Sequences (chothia definition)
CDRH1	GFTFSSS
CDRH2	WSDGSN
CDRH3	DKTYVSGYTSTWYYFNY
CDRL1	RASQSIDNWLA
CDRL2	TASRLES
CDRL3	QHRT

Orientation Angles (from ABangle)
HL	-57.98°
HC1	71.36°
HC2	121.89°
LC1	121.66°
LC2	83.61°
dc	16.5Å

Fv Details
Heavy chain	D
Light chain	C
Heavy subgroup	IGHV4
Light subgroup	IGKV3
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	31A	31B	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	Q	E	S	G	P	G	L	V	K	P	S	Q	T	L	S	L	T	C	S	V	S	G	G	S	I	G	G	S	S	Y	Y	W	S	W	I	R	H	H	P	G	K	G	L	E	W	I	G	Y	I	N	Y	R	G	I	T	H	Y	N	A	A	L	K	S	R	V	S	M	S	V	E	T	S	Q	N	H	F	S	L	Q	L	T	S	V	T	A	A	D	T	A	V	Y	Y	C	A	R	L	T	S	D	C	S	G	G	N	C	Y	Q	A	F	D	Y	W	G	Q	G	S	L	V	S	V	S	G

Light chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	30A	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107
I	V	L	T	Q	S	P	G	T	L	S	L	S	P	G	E	T	A	T	L	S	C	R	A	S	Q	S	V	S	S	S	Y	L	A	W	Y	Q	Q	K	P	G	Q	A	P	R	L	L	I	Y	G	A	S	G	R	A	T	G	I	P	D	R	F	S	G	S	G	S	G	T	D	F	T	L	T	I	S	R	L	E	P	E	D	F	A	V	Y	Y	C	Q	Q	Y	G	R	S	G	Y	T	F	G	Q	G	T	K	L	E	I	K

Antigen Details
Antigen chains	E
Antigen type	protein
Antigen name	pre-glycoprotein polyprotein gp complex
Antigen species	JUNIN MAMMARENAVIRUS
Antigen sequence	DLPLLCTLNKSHLYIKGGNASFKISFDDIAVLLPEYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWYLDPPFLCRNRTKTEGFIFQVNTSKTGINENYAKKFKTGMHHLYREYPDSCLDGKLCLMKAQPTSWPLQCPL

CDR Sequences (chothia definition)
CDRH1	GGSIGGSSY
CDRH2	NYRGI
CDRH3	LTSDCSGGNCYQAFDY
CDRL1	RASQSVSSSYLA
CDRL2	GASGRAT
CDRL3	QQYGRSGYT

Orientation Angles (from ABangle)
HL	-63.81°
HC1	71.18°
HC2	117.13°
LC1	118.02°
LC2	81.64°
dc	16.25Å

Fv Details
Heavy chain	I
Light chain	H
Heavy subgroup	IGHV4
Light subgroup	IGKV3
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	31A	31B	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	Q	E	S	G	P	G	L	V	K	P	S	Q	T	L	S	L	T	C	S	V	S	G	G	S	I	G	G	S	S	Y	Y	W	S	W	I	R	H	H	P	G	K	G	L	E	W	I	G	Y	I	N	Y	R	G	I	T	H	Y	N	A	A	L	K	S	R	V	S	M	S	V	E	T	S	Q	N	H	F	S	L	Q	L	T	S	V	T	A	A	D	T	A	V	Y	Y	C	A	R	L	T	S	D	C	S	G	G	N	C	Y	Q	A	F	D	Y	W	G	Q	G	S	L	V	S	V	S	G

Light chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	30A	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107
I	V	L	T	Q	S	P	G	T	L	S	L	S	P	G	E	T	A	T	L	S	C	R	A	S	Q	S	V	S	S	S	Y	L	A	W	Y	Q	Q	K	P	G	Q	A	P	R	L	L	I	Y	G	A	S	G	R	A	T	G	I	P	D	R	F	S	G	S	G	S	G	T	D	F	T	L	T	I	S	R	L	E	P	E	D	F	A	V	Y	Y	C	Q	Q	Y	G	R	S	G	Y	T	F	G	Q	G	T	K	L	E	I	K

Antigen Details
Antigen chains	J
Antigen type	protein
Antigen name	pre-glycoprotein polyprotein gp complex
Antigen species	JUNIN MAMMARENAVIRUS
Antigen sequence	DLPLLCTLNKSHLYIKGGNASFKISFDDIAVLLPEYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWYLDPPFLCRNRTKTEGFIFQVNTSKTGINENYAKKFKTGMHHLYREYPDSCLDGKLCLMKAQPTSWPLQCPL

CDR Sequences (chothia definition)
CDRH1	GGSIGGSSY
CDRH2	NYRGI
CDRH3	LTSDCSGGNCYQAFDY
CDRL1	RASQSVSSSYLA
CDRL2	GASGRAT
CDRL3	QQYGRSGYT

Orientation Angles (from ABangle)
HL	-63.81°
HC1	72.07°
HC2	117.19°
LC1	118.1°
LC2	82.59°
dc	16.12Å

Fv Details
Heavy chain	T
Light chain	S
Heavy subgroup	IGHV3
Light subgroup	IGKV1
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	100I	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	V	Q	L	V	E	S	G	G	G	V	V	Q	P	G	R	S	L	R	L	S	C	A	A	S	G	F	T	F	S	S	S	A	M	H	W	V	R	Q	A	P	G	K	G	L	E	W	V	A	V	I	W	S	D	G	S	N	E	N	Y	A	D	S	V	K	G	R	F	T	I	S	R	D	N	S	K	N	T	L	Y	L	Q	M	S	S	L	R	A	E	D	T	A	V	Y	Y	C	A	T	D	K	T	Y	V	S	G	Y	T	S	T	W	Y	Y	F	N	Y	W	G	Q	G	T	L	V	T	V	S	G

Light chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	96	97	98	99	100	101	102	103	104	105	106	107
I	Q	M	T	Q	S	P	S	T	L	S	A	S	V	G	D	R	V	T	I	T	C	R	A	S	Q	S	I	D	N	W	L	A	W	Y	Q	Q	K	P	G	K	A	P	K	L	L	I	Y	T	A	S	R	L	E	S	G	V	P	S	R	F	S	G	S	G	S	G	T	E	F	T	L	T	I	S	S	L	Q	P	D	D	F	A	T	Y	Y	C	Q	H	R	T	F	G	Q	G	T	K	V	E	I	K

Antigen Details
Antigen chains	R
Antigen type	protein
Antigen name	pre-glycoprotein polyprotein gp complex
Antigen species	JUNIN MAMMARENAVIRUS
Antigen sequence	DLPLLCTLNKSHLYIKGGNASFKISFDDIAVLLPEYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWYLDPPFLCRNRTKTEGFIFQVNTSKTGINENYAKKFKTGMHHLYREYPDSCLDGKLCLMKAQPTSWPLQCPL

CDR Sequences (chothia definition)
CDRH1	GFTFSSS
CDRH2	WSDGSN
CDRH3	DKTYVSGYTSTWYYFNY
CDRL1	RASQSIDNWLA
CDRL2	TASRLES
CDRL3	QHRT

Orientation Angles (from ABangle)
HL	-58.23°
HC1	70.74°
HC2	122.26°
LC1	120.88°
LC2	82.67°
dc	16.63Å

Fv Details
Heavy chain	G
Light chain	F
Heavy subgroup	IGHV3
Light subgroup	IGKV1
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	100I	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	V	Q	L	V	E	S	G	G	G	V	V	Q	P	G	R	S	L	R	L	S	C	A	A	S	G	F	T	F	S	S	S	A	M	H	W	V	R	Q	A	P	G	K	G	L	E	W	V	A	V	I	W	S	D	G	S	N	E	N	Y	A	D	S	V	K	G	R	F	T	I	S	R	D	N	S	K	N	T	L	Y	L	Q	M	S	S	L	R	A	E	D	T	A	V	Y	Y	C	A	T	D	K	T	Y	V	S	G	Y	T	S	T	W	Y	Y	F	N	Y	W	G	Q	G	T	L	V	T	V	S	G

Light chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	96	97	98	99	100	101	102	103	104	105	106	107
I	Q	M	T	Q	S	P	S	T	L	S	A	S	V	G	D	R	V	T	I	T	C	R	A	S	Q	S	I	D	N	W	L	A	W	Y	Q	Q	K	P	G	K	A	P	K	L	L	I	Y	T	A	S	R	L	E	S	G	V	P	S	R	F	S	G	S	G	S	G	T	E	F	T	L	T	I	S	S	L	Q	P	D	D	F	A	T	Y	Y	C	Q	H	R	T	F	G	Q	G	T	K	V	E	I	K

Antigen Details
Antigen chains	E
Antigen type	protein
Antigen name	pre-glycoprotein polyprotein gp complex
Antigen species	JUNIN MAMMARENAVIRUS
Antigen sequence	DLPLLCTLNKSHLYIKGGNASFKISFDDIAVLLPEYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWYLDPPFLCRNRTKTEGFIFQVNTSKTGINENYAKKFKTGMHHLYREYPDSCLDGKLCLMKAQPTSWPLQCPL

CDR Sequences (chothia definition)
CDRH1	GFTFSSS
CDRH2	WSDGSN
CDRH3	DKTYVSGYTSTWYYFNY
CDRL1	RASQSIDNWLA
CDRL2	TASRLES
CDRL3	QHRT

Orientation Angles (from ABangle)
HL	-58.21°
HC1	71.81°
HC2	121.2°
LC1	120.28°
LC2	83.82°
dc	16.59Å

Fv Details
Heavy chain	Q
Light chain	M
Heavy subgroup	IGHV4
Light subgroup	IGKV3
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	31A	31B	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	Q	E	S	G	P	G	L	V	K	P	S	Q	T	L	S	L	T	C	S	V	S	G	G	S	I	G	G	S	S	Y	Y	W	S	W	I	R	H	H	P	G	K	G	L	E	W	I	G	Y	I	N	Y	R	G	I	T	H	Y	N	A	A	L	K	S	R	V	S	M	S	V	E	T	S	Q	N	H	F	S	L	Q	L	T	S	V	T	A	A	D	T	A	V	Y	Y	C	A	R	L	T	S	D	C	S	G	G	N	C	Y	Q	A	F	D	Y	W	G	Q	G	S	L	V	S	V	S	G

Light chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	30A	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107
I	V	L	T	Q	S	P	G	T	L	S	L	S	P	G	E	T	A	T	L	S	C	R	A	S	Q	S	V	S	S	S	Y	L	A	W	Y	Q	Q	K	P	G	Q	A	P	R	L	L	I	Y	G	A	S	G	R	A	T	G	I	P	D	R	F	S	G	S	G	S	G	T	D	F	T	L	T	I	S	R	L	E	P	E	D	F	A	V	Y	Y	C	Q	Q	Y	G	R	S	G	Y	T	F	G	Q	G	T	K	L	E	I	K

Antigen Details
Antigen chains	R
Antigen type	protein
Antigen name	pre-glycoprotein polyprotein gp complex
Antigen species	JUNIN MAMMARENAVIRUS
Antigen sequence	DLPLLCTLNKSHLYIKGGNASFKISFDDIAVLLPEYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWYLDPPFLCRNRTKTEGFIFQVNTSKTGINENYAKKFKTGMHHLYREYPDSCLDGKLCLMKAQPTSWPLQCPL

CDR Sequences (chothia definition)
CDRH1	GGSIGGSSY
CDRH2	NYRGI
CDRH3	LTSDCSGGNCYQAFDY
CDRL1	RASQSVSSSYLA
CDRL2	GASGRAT
CDRL3	QQYGRSGYT

Orientation Angles (from ABangle)
HL	-62.81°
HC1	72.0°
HC2	117.62°
LC1	118.51°
LC2	82.76°
dc	16.28Å

Fv Details
Heavy chain	O
Light chain	N
Heavy subgroup	IGHV4
Light subgroup	IGKV3
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	31A	31B	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	101	102	103	104	105	106	107	108	109	110	111	112	113
V	Q	L	Q	E	S	G	P	G	L	V	K	P	S	Q	T	L	S	L	T	C	S	V	S	G	G	S	I	G	G	S	S	Y	Y	W	S	W	I	R	H	H	P	G	K	G	L	E	W	I	G	Y	I	N	Y	R	G	I	T	H	Y	N	A	A	L	K	S	R	V	S	M	S	V	E	T	S	Q	N	H	F	S	L	Q	L	T	S	V	T	A	A	D	T	A	V	Y	Y	C	A	R	L	T	S	D	C	S	G	G	N	C	Y	Q	A	F	D	Y	W	G	Q	G	S	L	V	S	V	S	G

Light chain

2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	30A	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107
I	V	L	T	Q	S	P	G	T	L	S	L	S	P	G	E	T	A	T	L	S	C	R	A	S	Q	S	V	S	S	S	Y	L	A	W	Y	Q	Q	K	P	G	Q	A	P	R	L	L	I	Y	G	A	S	G	R	A	T	G	I	P	D	R	F	S	G	S	G	S	G	T	D	F	T	L	T	I	S	R	L	E	P	E	D	F	A	V	Y	Y	C	Q	Q	Y	G	R	S	G	Y	T	F	G	Q	G	T	K	L	E	I	K

Antigen Details
Antigen chains	P
Antigen type	protein
Antigen name	pre-glycoprotein polyprotein gp complex
Antigen species	JUNIN MAMMARENAVIRUS
Antigen sequence	DLPLLCTLNKSHLYIKGGNASFKISFDDIAVLLPEYDVIIQHPADMSWCSKSDDQIWLSQWFMNAVGHDWYLDPPFLCRNRTKTEGFIFQVNTSKTGINENYAKKFKTGMHHLYREYPDSCLDGKLCLMKAQPTSWPLQCPL

CDR Sequences (chothia definition)
CDRH1	GGSIGGSSY
CDRH2	NYRGI
CDRH3	LTSDCSGGNCYQAFDY
CDRL1	RASQSVSSSYLA
CDRL2	GASGRAT
CDRL3	QQYGRSGYT

Orientation Angles (from ABangle)
HL	-63.59°
HC1	71.67°
HC2	116.33°
LC1	118.2°
LC2	81.97°
dc	16.19Å

Additional links and files for download: see help for more details.

Chothia-numbered structure	Download
IMGT-numbered structure	Download
Non-annotated structure from the PDB	Download
Summary file for this antibody	Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

Our privacy policy