Structure Viewer: 6cvk

>   Structure details

Hepatitis B E-antigen in complex with Scfv E13

PDB6cvk
SpeciesORYCTOLAGUS CUNICULUS
MethodX-RAY DIFFRACTION
Resolution2.38Å
Number of Fvs2
In complexTrue
Light chain typeunknown
Has constant regionFalse
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>   Fv information

This PDB has 2 Fv(s).

>   A/A
Fv Details
Heavy chainA
Light chainA
Heavy subgroupunknown
Light subgroupunknown
SpeciesORYCTOLAGUS CUNICULUS
In complex?True
scFv?True
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 100G 101 102 103 104 105 106 107 108 109 110 111 112 113
Q E Q L V E S G G R L V P P G G S L T L T C T V S G I D L S S N A I S W V R Q A P G K G L E Y I G I I Y G G S I P Y Y S R W A K G R F T I S K T S T T V A L K M S T L T A S D T A T Y F C A R G K S D G D G Y A A Y R L D P W G L G T L V T I S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 95A 96 97 98 99 100 101 102 103 104 105 106 107
E L V L T Q T P S S V S A A V G G T V T I N C Q A S Q S I S S R L G W Y Q Q K P G Q P P K L L I Y G A S T L T S G V P S R F K G S G S G T E F T L T I S G V Q R D D A A T Y Y C L G S D T S T D T A F G G G T E V V V K

Antigen Details
Antigen chainsC
Antigen typeprotein
Antigen namecapsid protein
Antigen speciesHEPATITIS B VIRUS
Antigen sequenceSKLCLGWLWGMDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHASPHHTALRQAILCWGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISALTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVV

CDR Sequences (chothia definition)
CDRH1GIDLSSN
CDRH2YGGSI
CDRH3GKSDGDGYAAYRLDP
CDRL1QASQSISSRLG
CDRL2GASTLTS
CDRL3LGSDTSTDTA

Orientation Angles (from ABangle)
HL-55.93°
HC170.52°
HC2122.47°
LC1119.94°
LC281.81°
dc16.06Å
>   B/B
Fv Details
Heavy chainB
Light chainB
Heavy subgroupunknown
Light subgroupunknown
SpeciesORYCTOLAGUS CUNICULUS
In complex?True
scFv?True
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 100G 101 102 103 104 105 106 107 108 109 110 111 112 113
Q E Q L V E S G G R L V P P G G S L T L T C T V S G I D L S S N A I S W V R Q A P G K G L E Y I G I I Y G G S I P Y Y S R W A K G R F T I S K T S T T V A L K M S T L T A S D T A T Y F C A R G K S D G D G Y A A Y R L D P W G L G T L V T I S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 95A 96 97 98 99 100 101 102 103 104 105 106 107
E L V L T Q T P S S V S A A V G G T V T I N C Q A S Q S I S S R L G W Y Q Q K P G Q P P K L L I Y G A S T L T S G V P S R F K G S G S G T E F T L T I S G V Q R D D A A T Y Y C L G S D T S T D T A F G G G T E V V V K

Antigen Details
Antigen chainsD
Antigen typeprotein
Antigen namecapsid protein
Antigen speciesHEPATITIS B VIRUS
Antigen sequenceSKLCLGWLWGMDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHASPHHTALRQAILCWGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISALTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILSTLPETTVV

CDR Sequences (chothia definition)
CDRH1GIDLSSN
CDRH2YGGSI
CDRH3GKSDGDGYAAYRLDP
CDRL1QASQSISSRLG
CDRL2GASTLTS
CDRL3LGSDTSTDTA

Orientation Angles (from ABangle)
HL-55.32°
HC170.98°
HC2122.74°
LC1120.24°
LC281.96°
dc16.02Å
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Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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