Structure Viewer: 6udk

> Structure details

Hiv-1 Bnab 1-55 in complex with Modified Bg505 Sosip-Based Immunogen Rc1 and 10-1074

PDB	6udk
Species	HOMO SAPIENS
Method	ELECTRON MICROSCOPY
Resolution	3.9Å
Number of Fvs	6
In complex	True
Light chain type	Kappa,unknown
Has constant region	True

> Fv information

This PDB has 6 Fv(s).

Fv Details
Heavy chain	M
Light chain	N
Heavy subgroup	unknown
Light subgroup	IGKV3
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	31A	31B	31C	31D	31E	31F	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	G	R	L	F	Q	S	G	T	E	V	K	R	P	G	A	S	V	K	I	S	C	R	A	D	D	D	P	Y	T	D	D	D	T	F	T	K	Y	Y	T	H	W	I	R	Q	A	P	G	Q	P	P	E	W	L	G	V	I	S	P	H	F	A	R	P	I	Y	S	Y	K	F	R	D	R	L	T	L	T	R	D	S	S	L	T	A	V	Y	F	E	L	R	G	L	Q	P	D	D	T	G	I	Y	F	C	A	R	D	P	F	G	D	M	Y	P	H	Y	N	Y	H	M	D	V	W	G	G	G	T	T	V	I	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	30A	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107
E	I	V	L	T	Q	S	P	A	I	L	S	V	S	P	G	D	R	V	I	L	S	C	K	A	S	E	G	L	S	S	S	D	L	A	W	Y	R	F	K	G	G	Q	I	P	T	L	V	I	F	G	A	S	N	R	A	R	G	T	P	D	R	F	S	G	S	G	S	G	T	D	F	T	L	T	I	N	R	V	E	P	E	D	F	A	T	Y	Y	C	Q	R	Y	G	G	T	P	I	T	F	G	G	G	T	K	V	D	I	K

Antigen Details
Antigen chains	R
Antigen type	protein
Antigen name	rc1 variant of hiv-1 env glycoprotein gp120
Antigen species	HUMAN IMMUNODEFICIENCY VIRUS 1
Antigen sequence	AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR

CDR Sequences (chothia definition)
CDRH1	DDPYTDDDTFTKY
CDRH2	SPHFAR
CDRH3	DPFGDMYPHYNYHMDV
CDRL1	KASEGLSSSDLA
CDRL2	GASNRAR
CDRL3	QRYGGTPIT

Orientation Angles (from ABangle)
HL	-62.43°
HC1	73.83°
HC2	114.67°
LC1	120.44°
LC2	83.65°
dc	16.33Å

Fv Details
Heavy chain	D
Light chain	E
Heavy subgroup	unknown
Light subgroup	IGKV3
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	31A	31B	31C	31D	31E	31F	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	G	R	L	F	Q	S	G	T	E	V	K	R	P	G	A	S	V	K	I	S	C	R	A	D	D	D	P	Y	T	D	D	D	T	F	T	K	Y	Y	T	H	W	I	R	Q	A	P	G	Q	P	P	E	W	L	G	V	I	S	P	H	F	A	R	P	I	Y	S	Y	K	F	R	D	R	L	T	L	T	R	D	S	S	L	T	A	V	Y	F	E	L	R	G	L	Q	P	D	D	T	G	I	Y	F	C	A	R	D	P	F	G	D	M	Y	P	H	Y	N	Y	H	M	D	V	W	G	G	G	T	T	V	I	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	30A	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107
E	I	V	L	T	Q	S	P	A	I	L	S	V	S	P	G	D	R	V	I	L	S	C	K	A	S	E	G	L	S	S	S	D	L	A	W	Y	R	F	K	G	G	Q	I	P	T	L	V	I	F	G	A	S	N	R	A	R	G	T	P	D	R	F	S	G	S	G	S	G	T	D	F	T	L	T	I	N	R	V	E	P	E	D	F	A	T	Y	Y	C	Q	R	Y	G	G	T	P	I	T	F	G	G	G	T	K	V	D	I	K

Antigen Details
Antigen chains	G
Antigen type	protein
Antigen name	rc1 variant of hiv-1 env glycoprotein gp120
Antigen species	HUMAN IMMUNODEFICIENCY VIRUS 1
Antigen sequence	AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR

CDR Sequences (chothia definition)
CDRH1	DDPYTDDDTFTKY
CDRH2	SPHFAR
CDRH3	DPFGDMYPHYNYHMDV
CDRL1	KASEGLSSSDLA
CDRL2	GASNRAR
CDRL3	QRYGGTPIT

Orientation Angles (from ABangle)
HL	-61.93°
HC1	73.45°
HC2	115.02°
LC1	120.58°
LC2	83.78°
dc	16.39Å

Fv Details
Heavy chain	H
Light chain	L
Heavy subgroup	unknown
Light subgroup	IGKV3
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	31A	31B	31C	31D	31E	31F	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	52A	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	G	R	L	F	Q	S	G	T	E	V	K	R	P	G	A	S	V	K	I	S	C	R	A	D	D	D	P	Y	T	D	D	D	T	F	T	K	Y	Y	T	H	W	I	R	Q	A	P	G	Q	P	P	E	W	L	G	V	I	S	P	H	F	A	R	P	I	Y	S	Y	K	F	R	D	R	L	T	L	T	R	D	S	S	L	T	A	V	Y	F	E	L	R	G	L	Q	P	D	D	T	G	I	Y	F	C	A	R	D	P	F	G	D	M	Y	P	H	Y	N	Y	H	M	D	V	W	G	G	G	T	T	V	I	V	S	S

Light chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	30A	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107
E	I	V	L	T	Q	S	P	A	I	L	S	V	S	P	G	D	R	V	I	L	S	C	K	A	S	E	G	L	S	S	S	D	L	A	W	Y	R	F	K	G	G	Q	I	P	T	L	V	I	F	G	A	S	N	R	A	R	G	T	P	D	R	F	S	G	S	G	S	G	T	D	F	T	L	T	I	N	R	V	E	P	E	D	F	A	T	Y	Y	C	Q	R	Y	G	G	T	P	I	T	F	G	G	G	T	K	V	D	I	K

Antigen Details
Antigen chains	K
Antigen type	protein
Antigen name	rc1 variant of hiv-1 env glycoprotein gp120
Antigen species	HUMAN IMMUNODEFICIENCY VIRUS 1
Antigen sequence	AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR

CDR Sequences (chothia definition)
CDRH1	DDPYTDDDTFTKY
CDRH2	SPHFAR
CDRH3	DPFGDMYPHYNYHMDV
CDRL1	KASEGLSSSDLA
CDRL2	GASNRAR
CDRL3	QRYGGTPIT

Orientation Angles (from ABangle)
HL	-62.19°
HC1	73.28°
HC2	114.29°
LC1	120.03°
LC2	83.63°
dc	16.33Å

Fv Details
Heavy chain	F
Light chain	I
Heavy subgroup	IGHV4
Light subgroup	unknown
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	100I	100J	100K	100L	100M	100N	100O	100P	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	V	Q	L	Q	E	S	G	P	G	L	V	K	P	S	E	T	L	S	V	T	C	S	V	S	G	D	S	M	N	N	Y	Y	W	T	W	I	R	Q	S	P	G	K	G	L	E	W	I	G	Y	I	S	D	R	E	S	A	T	Y	N	P	S	L	N	S	R	V	V	I	S	R	D	T	S	K	N	Q	L	S	L	K	L	N	S	V	T	P	A	D	T	A	V	Y	Y	C	A	T	A	R	R	G	Q	R	I	Y	G	V	V	S	F	G	E	F	F	Y	Y	Y	S	M	D	V	W	G	K	G	T	T	V	T	V	S	S

Light chain

11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	68A	68B	68C	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
L	S	V	A	L	G	E	T	A	R	I	S	C	G	R	Q	A	L	G	S	R	A	V	Q	W	Y	Q	H	R	P	G	Q	A	P	I	L	L	I	Y	N	N	Q	D	R	P	S	G	I	P	E	R	F	S	G	T	P	D	I	N	F	G	T	R	A	T	L	T	I	S	G	V	E	A	G	D	E	A	D	Y	Y	C	H	M	W	D	S	R	S	G	F	S	W	S	F	G	G	A	T	R	L	T	V	L

Antigen Details
Antigen chains	K
Antigen type	protein
Antigen name	rc1 variant of hiv-1 env glycoprotein gp120
Antigen species	HUMAN IMMUNODEFICIENCY VIRUS 1
Antigen sequence	AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR

CDR Sequences (chothia definition)
CDRH1	GDSMNNY
CDRH2	SDRES
CDRH3	ARRGQRIYGVVSFGEFFYYYSMDV
CDRL1	GRQALGSRAVQ
CDRL2	NNQDRPS
CDRL3	HMWDSRSGFSWS

Orientation Angles (from ABangle)
HL	-52.81°
HC1	71.83°
HC2	119.14°
LC1	126.44°
LC2	89.1°
dc	17.77Å

Fv Details
Heavy chain	A
Light chain	B
Heavy subgroup	IGHV4
Light subgroup	unknown
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	100I	100J	100K	100L	100M	100N	100O	100P	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	V	Q	L	Q	E	S	G	P	G	L	V	K	P	S	E	T	L	S	V	T	C	S	V	S	G	D	S	M	N	N	Y	Y	W	T	W	I	R	Q	S	P	G	K	G	L	E	W	I	G	Y	I	S	D	R	E	S	A	T	Y	N	P	S	L	N	S	R	V	V	I	S	R	D	T	S	K	N	Q	L	S	L	K	L	N	S	V	T	P	A	D	T	A	V	Y	Y	C	A	T	A	R	R	G	Q	R	I	Y	G	V	V	S	F	G	E	F	F	Y	Y	Y	S	M	D	V	W	G	K	G	T	T	V	T	V	S	S

Light chain

11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	68A	68B	68C	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
L	S	V	A	L	G	E	T	A	R	I	S	C	G	R	Q	A	L	G	S	R	A	V	Q	W	Y	Q	H	R	P	G	Q	A	P	I	L	L	I	Y	N	N	Q	D	R	P	S	G	I	P	E	R	F	S	G	T	P	D	I	N	F	G	T	R	A	T	L	T	I	S	G	V	E	A	G	D	E	A	D	Y	Y	C	H	M	W	D	S	R	S	G	F	S	W	S	F	G	G	A	T	R	L	T	V	L

Antigen Details
Antigen chains	G
Antigen type	protein
Antigen name	rc1 variant of hiv-1 env glycoprotein gp120
Antigen species	HUMAN IMMUNODEFICIENCY VIRUS 1
Antigen sequence	AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR

CDR Sequences (chothia definition)
CDRH1	GDSMNNY
CDRH2	SDRES
CDRH3	ARRGQRIYGVVSFGEFFYYYSMDV
CDRL1	GRQALGSRAVQ
CDRL2	NNQDRPS
CDRL3	HMWDSRSGFSWS

Orientation Angles (from ABangle)
HL	-52.67°
HC1	71.37°
HC2	118.34°
LC1	126.51°
LC2	88.81°
dc	17.82Å

Fv Details
Heavy chain	O
Light chain	P
Heavy subgroup	IGHV4
Light subgroup	unknown
Species	HOMO SAPIENS
In complex?	True
scFv?	False
Has constant domain?	True

Numbered Sequences (chothia)

Heavy chain

1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	82A	82B	82C	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	100A	100B	100C	100D	100E	100F	100G	100H	100I	100J	100K	100L	100M	100N	100O	100P	101	102	103	104	105	106	107	108	109	110	111	112	113
Q	V	Q	L	Q	E	S	G	P	G	L	V	K	P	S	E	T	L	S	V	T	C	S	V	S	G	D	S	M	N	N	Y	Y	W	T	W	I	R	Q	S	P	G	K	G	L	E	W	I	G	Y	I	S	D	R	E	S	A	T	Y	N	P	S	L	N	S	R	V	V	I	S	R	D	T	S	K	N	Q	L	S	L	K	L	N	S	V	T	P	A	D	T	A	V	Y	Y	C	A	T	A	R	R	G	Q	R	I	Y	G	V	V	S	F	G	E	F	F	Y	Y	Y	S	M	D	V	W	G	K	G	T	T	V	T	V	S	S

Light chain

11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	68A	68B	68C	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	95A	95B	95C	96	97	98	99	100	101	102	103	104	105	106	107
L	S	V	A	L	G	E	T	A	R	I	S	C	G	R	Q	A	L	G	S	R	A	V	Q	W	Y	Q	H	R	P	G	Q	A	P	I	L	L	I	Y	N	N	Q	D	R	P	S	G	I	P	E	R	F	S	G	T	P	D	I	N	F	G	T	R	A	T	L	T	I	S	G	V	E	A	G	D	E	A	D	Y	Y	C	H	M	W	D	S	R	S	G	F	S	W	S	F	G	G	A	T	R	L	T	V	L

Antigen Details
Antigen chains	R
Antigen type	protein
Antigen name	rc1 variant of hiv-1 env glycoprotein gp120
Antigen species	HUMAN IMMUNODEFICIENCY VIRUS 1
Antigen sequence	AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPNLLSNMRGELKQCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPNNNTVKSIRIGPGQAFYYFGDIIGDIRMAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSIVLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR

CDR Sequences (chothia definition)
CDRH1	GDSMNNY
CDRH2	SDRES
CDRH3	ARRGQRIYGVVSFGEFFYYYSMDV
CDRL1	GRQALGSRAVQ
CDRL2	NNQDRPS
CDRL3	HMWDSRSGFSWS

Orientation Angles (from ABangle)
HL	-52.1°
HC1	72.45°
HC2	119.37°
LC1	126.9°
LC2	89.37°
dc	17.76Å

Additional links and files for download: see help for more details.

Chothia-numbered structure	Download
IMGT-numbered structure	Download
Non-annotated structure from the PDB	Download
Summary file for this antibody	Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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