Structure Viewer: 6vyv

>   Structure details

Human Mabs Broadly Protect against infection of arthritiogenic alphaviruses By Recognizing Conserved Elements of the Mxr8 Receptor Binding Domain

PDB6vyv
SpeciesHOMO SAPIENS
MethodELECTRON MICROSCOPY
Resolution6.33Å
Number of Fvs4
In complexTrue
Light chain typeLambda
Has constant regionTrue
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>   Fv information

This PDB has 4 Fv(s).

>   K/O
Fv Details
Heavy chainK
Light chainO
Heavy subgroupIGHV9
Light subgroupIGLV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113
Q I Q L V Q S G R E V K N P G E T V K I S C K A S G Y T F T E Y P M L W V K Q A P G K G F R W M G L I Y T N T G E P T Y A E E F K G R F V F S L E I S A S T A Y L Q I N N L T N E D T A T Y F C V R D Y F I S L D Y W G Q G T T L T V S S

Light chain

1 2 3 4 5 6 7 8 9 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
Q A V V T Q E S A L T T S P G E T V T L T C R S N I G A V T S S N C A N W V Q E K P D H F F T G L I G D T N N R R S G V P A R F S G S L I G D K A A L T I T G A Q T E D E A I Y F C A L W Y N N L W V F G G G T K L T V L

Antigen Details
Antigen chainsE
Antigen typeprotein
Antigen namee2 glycoprotein
Antigen speciesROSS RIVER VIRUS (STRAIN T48)
Antigen sequenceSVTEHFNVYKATRPYLAYCADCGDGYFCYSPVAIEKIRDEAPDGMLKIQVSAQIGLDKAGTHAHTKIRYMAGHDVQESKRDSLRVYTSAACSIHGTMGHFIVAHCPPGDYLKVSFEDADSHVKACKVQYKHDPLPVGREKFVVRPHFGVELPCTSYQLTTAPTDEEIDMHTPPDIPDRTLLSQTAGNVKITAGGRTIRYNCTCGRDNVGTTSTDKTINTCKIDQCHAAVTSHDKWQFTSPFVPRADQTARRGKVHVPFPLTNVTCRVPLARAPDVTYGKKEVTLRLHPDHPTLFSYRSLGAEPHPYEEWVDKFSERIIPVTEEGIEYQWGNNPPVRLWAQL

CDR Sequences (chothia definition)
CDRH1GYTFTEY
CDRH2YTNTGE
CDRH3DYFISLDY
CDRL1RSNIGAVTSSNCAN
CDRL2DTNNRRS
CDRL3ALWYNNLWV

Orientation Angles (from ABangle)
HL-65.4°
HC163.89°
HC2114.21°
LC1125.69°
LC280.59°
dc16.14Å
>   I/M
Fv Details
Heavy chainI
Light chainM
Heavy subgroupIGHV9
Light subgroupIGLV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113
Q I Q L V Q S G R E V K N P G E T V K I S C K A S G Y T F T E Y P M L W V K Q A P G K G F R W M G L I Y T N T G E P T Y A E E F K G R F V F S L E I S A S T A Y L Q I N N L T N E D T A T Y F C V R D Y F I S L D Y W G Q G T T L T V S S

Light chain

1 2 3 4 5 6 7 8 9 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
Q A V V T Q E S A L T T S P G E T V T L T C R S N I G A V T S S N C A N W V Q E K P D H F F T G L I G D T N N R R S G V P A R F S G S L I G D K A A L T I T G A Q T E D E A I Y F C A L W Y N N L W V F G G G T K L T V L

Antigen Details
Antigen chainsF
Antigen typeprotein
Antigen namee2 glycoprotein
Antigen speciesROSS RIVER VIRUS (STRAIN T48)
Antigen sequenceSVTEHFNVYKATRPYLAYCADCGDGYFCYSPVAIEKIRDEAPDGMLKIQVSAQIGLDKAGTHAHTKIRYMAGHDVQESKRDSLRVYTSAACSIHGTMGHFIVAHCPPGDYLKVSFEDADSHVKACKVQYKHDPLPVGREKFVVRPHFGVELPCTSYQLTTAPTDEEIDMHTPPDIPDRTLLSQTAGNVKITAGGRTIRYNCTCGRDNVGTTSTDKTINTCKIDQCHAAVTSHDKWQFTSPFVPRADQTARRGKVHVPFPLTNVTCRVPLARAPDVTYGKKEVTLRLHPDHPTLFSYRSLGAEPHPYEEWVDKFSERIIPVTEEGIEYQWGNNPPVRLWAQL

CDR Sequences (chothia definition)
CDRH1GYTFTEY
CDRH2YTNTGE
CDRH3DYFISLDY
CDRL1RSNIGAVTSSNCAN
CDRL2DTNNRRS
CDRL3ALWYNNLWV

Orientation Angles (from ABangle)
HL-61.57°
HC167.32°
HC2114.15°
LC1125.44°
LC285.37°
dc15.84Å
>   L/P
Fv Details
Heavy chainL
Light chainP
Heavy subgroupIGHV9
Light subgroupIGLV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113
Q I Q L V Q S G R E V K N P G E T V K I S C K A S G Y T F T E Y P M L W V K Q A P G K G F R W M G L I Y T N T G E P T Y A E E F K G R F V F S L E I S A S T A Y L Q I N N L T N E D T A T Y F C V R D Y F I S L D Y W G Q G T T L T V S S

Light chain

1 2 3 4 5 6 7 8 9 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
Q A V V T Q E S A L T T S P G E T V T L T C R S N I G A V T S S N C A N W V Q E K P D H F F T G L I G D T N N R R S G V P A R F S G S L I G D K A A L T I T G A Q T E D E A I Y F C A L W Y N N L W V F G G G T K L T V L

Antigen Details
Antigen chainsH
Antigen typeprotein
Antigen namee2 glycoprotein
Antigen speciesROSS RIVER VIRUS (STRAIN T48)
Antigen sequenceSVTEHFNVYKATRPYLAYCADCGDGYFCYSPVAIEKIRDEAPDGMLKIQVSAQIGLDKAGTHAHTKIRYMAGHDVQESKRDSLRVYTSAACSIHGTMGHFIVAHCPPGDYLKVSFEDADSHVKACKVQYKHDPLPVGREKFVVRPHFGVELPCTSYQLTTAPTDEEIDMHTPPDIPDRTLLSQTAGNVKITAGGRTIRYNCTCGRDNVGTTSTDKTINTCKIDQCHAAVTSHDKWQFTSPFVPRADQTARRGKVHVPFPLTNVTCRVPLARAPDVTYGKKEVTLRLHPDHPTLFSYRSLGAEPHPYEEWVDKFSERIIPVTEEGIEYQWGNNPPVRLWAQL

CDR Sequences (chothia definition)
CDRH1GYTFTEY
CDRH2YTNTGE
CDRH3DYFISLDY
CDRL1RSNIGAVTSSNCAN
CDRL2DTNNRRS
CDRL3ALWYNNLWV

Orientation Angles (from ABangle)
HL-63.99°
HC167.17°
HC2110.65°
LC1117.14°
LC282.31°
dc16.47Å
>   J/N
Fv Details
Heavy chainJ
Light chainN
Heavy subgroupIGHV9
Light subgroupIGLV1
SpeciesHOMO SAPIENS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113
Q I Q L V Q S G R E V K N P G E T V K I S C K A S G Y T F T E Y P M L W V K Q A P G K G F R W M G L I Y T N T G E P T Y A E E F K G R F V F S L E I S A S T A Y L Q I N N L T N E D T A T Y F C V R D Y F I S L D Y W G Q G T T L T V S S

Light chain

1 2 3 4 5 6 7 8 9 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
Q A V V T Q E S A L T T S P G E T V T L T C R S N I G A V T S S N C A N W V Q E K P D H F F T G L I G D T N N R R S G V P A R F S G S L I G D K A A L T I T G A Q T E D E A I Y F C A L W Y N N L W V F G G G T K L T V L

Antigen Details
Antigen chainsG
Antigen typeprotein
Antigen namee2 glycoprotein
Antigen speciesROSS RIVER VIRUS (STRAIN T48)
Antigen sequenceSVTEHFNVYKATRPYLAYCADCGDGYFCYSPVAIEKIRDEAPDGMLKIQVSAQIGLDKAGTHAHTKIRYMAGHDVQESKRDSLRVYTSAACSIHGTMGHFIVAHCPPGDYLKVSFEDADSHVKACKVQYKHDPLPVGREKFVVRPHFGVELPCTSYQLTTAPTDEEIDMHTPPDIPDRTLLSQTAGNVKITAGGRTIRYNCTCGRDNVGTTSTDKTINTCKIDQCHAAVTSHDKWQFTSPFVPRADQTARRGKVHVPFPLTNVTCRVPLARAPDVTYGKKEVTLRLHPDHPTLFSYRSLGAEPHPYEEWVDKFSERIIPVTEEGIEYQWGNNPPVRLWAQL

CDR Sequences (chothia definition)
CDRH1GYTFTEY
CDRH2YTNTGE
CDRH3DYFISLDY
CDRL1RSNIGAVTSSNCAN
CDRL2DTNNRRS
CDRL3ALWYNNLWV

Orientation Angles (from ABangle)
HL-62.18°
HC165.06°
HC2108.27°
LC1119.47°
LC279.44°
dc16.23Å
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Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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