Structure Viewer: 7t92

>   Structure details

Structure of the Peroxisomal Retro-Translocon Formed By a Heterotrimeric Ubiquitin Ligase complex

PDB7t92
SpeciesSYNTHETIC CONSTRUCT
MethodELECTRON MICROSCOPY
Resolution3.1Å
Number of Fvs1
In complexTrue
Light chain typeKappa
Has constant regionFalse
>   Structure visualisation
Please note the WebGL plugin needs to be enabled to use PV Viewer.

Display options:














>   Fv information

This PDB has 1 Fv(s).

>   H/L
Fv Details
Heavy chainH
Light chainL
Heavy subgroupIGHV3
Light subgroupIGKV1
SpeciesSYNTHETIC CONSTRUCT
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 52A 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 101 102
E V Q L V E S G G G L V Q P G G S L R L S C A A S G F N L Y S S S I H W V R Q A P G K G L E W V A Y I Y S S S G S T S Y A D S V K G R F T I S A D T S K N T A Y L Q M N S L R A E D T A V Y Y C A R G Y Y

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 95A 96 97 98 99 100 101 102 103 104
D I Q M T Q S P S S L S A S V G D R V T I T C R A S Q S V S S A V A W Y Q Q K P G K A P K L L I Y S A S S L Y S G V P S R F S G S R S G T D F T L T I S S L Q P E D F A T Y Y C Q Q G S S L G L L T F G Q G T K V

Antigen Details
Antigen chainsB
Antigen typeprotein
Antigen nameperoxin-12
Antigen speciesTHERMOTHELOMYCES THERMOPHILUS ATCC 42464
Antigen sequenceMEFIPALQARIDEHKPSLFELLSEQQLAALLPPTVRYLLTVLTQRYPRYLLRVLNSFDELYALAALVVERHYLRTRGGSFTEHFYGLKRERALAAEIPRASAAAPGAVRDALRLRPADVWRNLLVIVGVPYLKRKLDEAHEADAPRAMMGAAYNRPPLPGAPWRERVAFWWRCFLRRVYPAVNAAYYLSILAFNLAYLFDNSKYHSPFLCLIGTRVRRMSAADYRAIEALEERAAKRRGGRSVAARMLGGLSLVLPTSIFALKFLEWWYASDFAKQLSRKAAESLDLPPPVVAGLPTGAGGGGGSEKAQQPRREKELGKEKDEEVEEEEEEVSEEEKERRAIERAPVSASSLLPIYTVPPPENSDQCPICEGEITTAAACQTGIVYCYPCIHKWLTGTHPRQEKFMAERAGKWESGEGRCAVTGRRVLGGTEGLRRIMV

CDR Sequences (chothia definition)
CDRH1GFNLYSS
CDRH2YSSSGS
CDRH3GYY
CDRL1RASQSVSSAVA
CDRL2SASSLYS
CDRL3QQGSSLGLLT

Orientation Angles (from ABangle)
HL-56.37°
HC172.22°
HC2118.97°
LC1121.01°
LC284.76°
dc16.35Å
>   Downloads

Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

Our privacy policy