Structure Viewer: 8iee

>   Structure details

Crystal Structure of Nanobody Vhh-31 with Mers-Cov Rbd

PDB8iee
SpeciesCAMELUS DROMEDARIUS
MethodX-RAY DIFFRACTION
Resolution3.21Å
Number of Fvs2
In complexTrue
Light chain typeNA
Has constant regionFalse
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>   Fv information

This PDB has 2 Fv(s).

>   D/-
Fv Details
Heavy chainD
Light chain
Heavy subgroupIGHV1
Light subgroupNA
SpeciesCAMELUS DROMEDARIUS
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 100G 100H 100I 100J 100K 100L 100M 100N 100O 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L Q E S G G G S V Q T G G S L R L S C A G S G Y T D N S C S M G W Y R Q A P G R E R E L I G T I I S D G T T Y Y S D A V K G R F T I S L D N A K N T V Y L Q M N N L K P E D T A M Y I C N T G W S Q G S L V N R T T G W T R D C W S F G I W G Q G T Q V T V S S

Antigen Details
Antigen chainsA
Antigen typeprotein
Antigen namespike protein s1
Antigen speciesMIDDLE EAST RESPIRATORY SYNDROME-RELATEDCORONAVIRUS
Antigen sequenceEAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEHHHHHH

CDR Sequences (chothia definition)
CDRH1GYTDNSC
CDRH2ISDGT
CDRH3GWSQGSLVNRTTGWTRDCWSFGI

>   C/-
Fv Details
Heavy chainC
Light chain
Heavy subgroupIGHV1
Light subgroupNA
SpeciesCAMELUS DROMEDARIUS
In complex?True
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 100G 100H 100I 100J 100K 100L 100M 100N 100O 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L Q E S G G G S V Q T G G S L R L S C A G S G Y T D N S C S M G W Y R Q A P G R E R E L I G T I I S D G T T Y Y S D A V K G R F T I S L D N A K N T V Y L Q M N N L K P E D T A M Y I C N T G W S Q G S L V N R T T G W T R D C W S F G I W G Q G T Q V T V S S

Antigen Details
Antigen chainsB
Antigen typeprotein
Antigen namespike protein s1
Antigen speciesMIDDLE EAST RESPIRATORY SYNDROME-RELATEDCORONAVIRUS
Antigen sequenceEAKPSGSVVEQAEGVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEHHHHHH

CDR Sequences (chothia definition)
CDRH1GYTDNSC
CDRH2ISDGT
CDRH3GWSQGSLVNRTTGWTRDCWSFGI

>   Downloads

Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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