Structure Viewer: 8j7v

>   Structure details

Cryo-Em Structure of Hznt7-Fab complex in Zinc-Unbound State, Determined in Heterogeneous Conformations- One Subunit in an inward-Facing and the Other in an Outward-Facing Conformation

PDB8j7v
SpeciesMUS MUSCULUS
MethodELECTRON MICROSCOPY
Resolution2.79Å
Number of Fvs2
In complexTrue
Light chain typeKappa
Has constant regionTrue
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>   Fv information

This PDB has 2 Fv(s).

>   E/C
Fv Details
Heavy chainE
Light chainC
Heavy subgroupIGHV2
Light subgroupIGKV3
SpeciesMUS MUSCULUS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 101 102 103 104 105 106 107 108 109 110 111 112 113
E V Q L Q E S G P G L V A P S Q S L S I T C T V S G F S L T N Y A V H W V R Q S P G K G L E W L G V I W S N G R T D Y N A A F I S R L S I S K D N S K S Q V F F K M N S L Q A D D T A I Y Y C A R K L A Y E G A M D Y W G Q G T S V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 30D 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I V L T Q S P A S L A V S L R R R A T I S C R A S E S V D G Y G H S F M H W Y Q Q K S G Q P P K L L I Y R A S N L E S G V P A R F S G S G S R T D F T L T I D P V E A D D A A T Y Y C Q Q S N E D P Y T F G S G T K L E I K

Antigen Details
Antigen chainsA
Antigen typeprotein
Antigen namezinc transporter 7
Antigen speciesHOMO SAPIENS
Antigen sequenceMGGVAMPGAEDDVVMLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSILGFVVNLIGIFVFKHGGHGHSHGSGHGHSHSLFNGALDQAHGHVDHCHSHEVKHGAAHSHDHAHGHGHFHSHDGPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPLLENSLPQCYQRVQQLQGVYSLQEQHFWTLCSDVYVGTLKLIVAPDADARWILSQTHNIFTQAGVRQLYVQIDFAAM

CDR Sequences (chothia definition)
CDRH1GFSLTNY
CDRH2WSNGR
CDRH3KLAYEGAMDY
CDRL1RASESVDGYGHSFMH
CDRL2RASNLES
CDRL3QQSNEDPYT

Orientation Angles (from ABangle)
HL-62.26°
HC173.55°
HC2118.27°
LC1118.67°
LC284.34°
dc16.05Å
>   F/D
Fv Details
Heavy chainF
Light chainD
Heavy subgroupIGHV2
Light subgroupIGKV3
SpeciesMUS MUSCULUS
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 101 102 103 104 105 106 107 108 109 110 111 112 113
E V Q L Q E S G P G L V A P S Q S L S I T C T V S G F S L T N Y A V H W V R Q S P G K G L E W L G V I W S N G R T D Y N A A F I S R L S I S K D N S K S Q V F F K M N S L Q A D D T A I Y Y C A R K L A Y E G A M D Y W G Q G T S V T V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 30D 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I V L T Q S P A S L A V S L R R R A T I S C R A S E S V D G Y G H S F M H W Y Q Q K S G Q P P K L L I Y R A S N L E S G V P A R F S G S G S R T D F T L T I D P V E A D D A A T Y Y C Q Q S N E D P Y T F G S G T K L E I K

Antigen Details
Antigen chainsB
Antigen typeprotein
Antigen namezinc transporter 7
Antigen speciesHOMO SAPIENS
Antigen sequenceMGGVAMPGAEDDVVMLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSILGFVVNLIGIFVFKHGGHGHSHGSGHGHSHSLFNGALDQAHGHVDHCHSHEVKHGAAHSHDHAHGHGHFHSHDGPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSVIPLLRESVGILMQRTPPLLENSLPQCYQRVQQLQGVYSLQEQHFWTLCSDVYVGTLKLIVAPDADARWILSQTHNIFTQAGVRQLYVQIDFAAM

CDR Sequences (chothia definition)
CDRH1GFSLTNY
CDRH2WSNGR
CDRH3KLAYEGAMDY
CDRL1RASESVDGYGHSFMH
CDRL2RASNLES
CDRL3QQSNEDPYT

Orientation Angles (from ABangle)
HL-62.15°
HC173.7°
HC2118.42°
LC1118.74°
LC284.33°
dc16.02Å
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Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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