Structure Viewer: 8v8k

>   Structure details

Crystal Structure of Nanobody Nbe

PDB8v8k
SpeciesLAMA GLAMA
MethodX-RAY DIFFRACTION
Resolution2.85Å
Number of Fvs3
In complexFalse
Light chain typeNA
Has constant regionFalse
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>   Fv information

This PDB has 3 Fv(s).

>   A/-
Fv Details
Heavy chainA
Light chain
Heavy subgroupIGHV1
Light subgroupNA
SpeciesLAMA GLAMA
In complex?False
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 100G 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L V E S G G G L V Q A G G S L R L S C A A S G S I S S I S T M G W Y R Q A P G K E R E L V A A I T S G G S T N Y A D S V K G R F T I S R D N A K N T V Y L Q M N S L K P E D T A V Y Y C N F K Y Y S G S Y F Y K S E Y D Y W G K G T P V T V S S


CDR Sequences (chothia definition)
CDRH1GSISSIS
CDRH2TSGGS
CDRH3KYYSGSYFYKSEYDY

>   B/-
Fv Details
Heavy chainB
Light chain
Heavy subgroupIGHV1
Light subgroupNA
SpeciesLAMA GLAMA
In complex?False
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 100G 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L V E S G G G L V Q A G G S L R L S C A A S G S I S S I S T M G W Y R Q A P G K E R E L V A A I T S G G S T N Y A D S V K G R F T I S R D N A K N T V Y L Q M N S L K P E D T A V Y Y C N F K Y Y S G S Y F Y K S E Y D Y W G K G T P V T V S S


CDR Sequences (chothia definition)
CDRH1GSISSIS
CDRH2TSGGS
CDRH3KYYSGSYFYKSEYDY

>   C/-
Fv Details
Heavy chainC
Light chain
Heavy subgroupIGHV1
Light subgroupNA
SpeciesLAMA GLAMA
In complex?False
scFv?False
Has constant domain?False

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 100G 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L V E S G G G L V Q A G G S L R L S C A A S G S I S S I S T M G W Y R Q A P G K E R E L V A A I T S G G S T N Y A D S V K G R F T I S R D N A K N T V Y L Q M N S L K P E D T A V Y Y C N F K Y Y S G S Y F Y K S E Y D Y W G K G T P V T V S S


CDR Sequences (chothia definition)
CDRH1GSISSIS
CDRH2TSGGS
CDRH3KYYSGSYFYKSEYDY

>   Downloads

Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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