Structure Viewer: 9iy2

>   Structure details

Immune complex of Hev-E2S, Nab 8C11 and Nab 8H3

PDB9iy2
SpeciesMUS SP.
MethodX-RAY DIFFRACTION
Resolution3.476Å
Number of Fvs4
In complexTrue
Light chain typeKappa
Has constant regionTrue
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>   Fv information

This PDB has 4 Fv(s).

>   H/L
Fv Details
Heavy chainH
Light chainL
Heavy subgroupIGHV8
Light subgroupIGKV12
SpeciesMUS SP.
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 31A 31B 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V T L K E S G P G I L Q P S Q T L S L T C S F S G F S L S T S G M G V G W I R Q P S G K G L E W L A H I W W D D V K R Y S P A L K S R L T I S K D T S S S Q L F L K I A S V D T A D T A T Y Y C A R I K S V I T T G D Y A L D Y W G Q G T S V A V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I Q M T Q S P A S L S V S V G E T V T I T C R A S E I I Y S N L A W Y Q Q K Q G K S P Q L L V Y S A T N L A E G V P S R F S G S G S G T Q Y S L K I N S L Q S E D F G S Y Y C Q H F W G N P W T F G G G T K L E I K

Antigen Details
Antigen chainsA
Antigen typeprotein
Antigen namesecreted protein orf2
Antigen speciesHEPATITIS E VIRUS (STRAIN PAKISTAN)
Antigen sequenceMQLFYSRPVVSANGEPTVKLYTSVENAQQDKGIAIPHDIDLGESRVVIQDYDNQHEQDRPTPSPAPSRPFSVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSVTLVNVATGAQAVARSLDWTKVTLDGRPLSTIQQHSKTFFVLPLRGKLSFWEAGTTKAGYPYNYNTTASDQLLVENAAGHRVAISTYTTSLGAGPVSISAVAVLAPPPR

CDR Sequences (chothia definition)
CDRH1GFSLSTSGM
CDRH2WWDDV
CDRH3IKSVITTGDYALDY
CDRL1RASEIIYSNLA
CDRL2SATNLAE
CDRL3QHFWGNPWT

Orientation Angles (from ABangle)
HL-57.49°
HC170.16°
HC2117.45°
LC1120.51°
LC281.79°
dc16.48Å
>   D/C
Fv Details
Heavy chainD
Light chainC
Heavy subgroupIGHV8
Light subgroupIGKV12
SpeciesMUS SP.
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 31A 31B 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 100B 100C 100D 100E 100F 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V T L K E S G P G I L Q P S Q T L S L T C S F S G F S L S T S G M G V G W I R Q P S G K G L E W L A H I W W D D V K R Y S P A L K S R L T I S K D T S S S Q L F L K I A S V D T A D T A T Y Y C A R I K S V I T T G D Y A L D Y W G Q G T S V A V S S

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107
D I Q M T Q S P A S L S V S V G E T V T I T C R A S E I I Y S N L A W Y Q Q K Q G K S P Q L L V Y S A T N L A E G V P S R F S G S G S G T Q Y S L K I N S L Q S E D F G S Y Y C Q H F W G N P W T F G G G T K L E I K

Antigen Details
Antigen chainsB
Antigen typeprotein
Antigen namesecreted protein orf2
Antigen speciesHEPATITIS E VIRUS (STRAIN PAKISTAN)
Antigen sequenceMQLFYSRPVVSANGEPTVKLYTSVENAQQDKGIAIPHDIDLGESRVVIQDYDNQHEQDRPTPSPAPSRPFSVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSVTLVNVATGAQAVARSLDWTKVTLDGRPLSTIQQHSKTFFVLPLRGKLSFWEAGTTKAGYPYNYNTTASDQLLVENAAGHRVAISTYTTSLGAGPVSISAVAVLAPPPR

CDR Sequences (chothia definition)
CDRH1GFSLSTSGM
CDRH2WWDDV
CDRH3IKSVITTGDYALDY
CDRL1RASEIIYSNLA
CDRL2SATNLAE
CDRL3QHFWGNPWT

Orientation Angles (from ABangle)
HL-58.4°
HC170.8°
HC2117.16°
LC1119.03°
LC283.03°
dc16.47Å
>   E/F
Fv Details
Heavy chainE
Light chainF
Heavy subgroupIGHV2
Light subgroupIGKV8
SpeciesMUS SP.
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L K E S G P G L V A P S Q S L S I T C T V S G F S L I G Y G V N W V R Q P P E K G L E W L G M I W G D G S T D Y N S A L K S R L S I T K D N S K S Q V F L K M N S L Q T D D T A R Y Y C A M G V R P D P F D Y W G Q G T L V T V S A

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 30D 30E 30F 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 96 97 98 99 100 101 102 103 104 105 106 107
N I M M T Q S P S S L A V S A G E K V T M S C K S S Q S V L Y S S N Q K N Y L A W Y Q Q K P G Q S P K L L I Y W A S A R E S G V P D R F T G S G S G T D F T L T I N S V Q T E D L A V Y Y C H Q Y L S S Y T F G G G T K L E I K

Antigen Details
Antigen chainsB
Antigen typeprotein
Antigen namesecreted protein orf2
Antigen speciesHEPATITIS E VIRUS (STRAIN PAKISTAN)
Antigen sequenceMQLFYSRPVVSANGEPTVKLYTSVENAQQDKGIAIPHDIDLGESRVVIQDYDNQHEQDRPTPSPAPSRPFSVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSVTLVNVATGAQAVARSLDWTKVTLDGRPLSTIQQHSKTFFVLPLRGKLSFWEAGTTKAGYPYNYNTTASDQLLVENAAGHRVAISTYTTSLGAGPVSISAVAVLAPPPR

CDR Sequences (chothia definition)
CDRH1GFSLIGY
CDRH2WGDGS
CDRH3GVRPDPFDY
CDRL1KSSQSVLYSSNQKNYLA
CDRL2WASARES
CDRL3HQYLSSYT

Orientation Angles (from ABangle)
HL-56.8°
HC174.7°
HC2116.75°
LC1121.47°
LC284.48°
dc16.4Å
>   G/I
Fv Details
Heavy chainG
Light chainI
Heavy subgroupIGHV2
Light subgroupIGKV8
SpeciesMUS SP.
In complex?True
scFv?False
Has constant domain?True

Numbered Sequences (chothia)

Heavy chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 82A 82B 82C 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 100A 101 102 103 104 105 106 107 108 109 110 111 112 113
Q V Q L K E S G P G L V A P S Q S L S I T C T V S G F S L I G Y G V N W V R Q P P E K G L E W L G M I W G D G S T D Y N S A L K S R L S I T K D N S K S Q V F L K M N S L Q T D D T A R Y Y C A M G V R P D P F D Y W G Q G T L V T V S A

Light chain

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 30A 30B 30C 30D 30E 30F 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 96 97 98 99 100 101 102 103 104 105 106 107
N I M M T Q S P S S L A V S A G E K V T M S C K S S Q S V L Y S S N Q K N Y L A W Y Q Q K P G Q S P K L L I Y W A S A R E S G V P D R F T G S G S G T D F T L T I N S V Q T E D L A V Y Y C H Q Y L S S Y T F G G G T K L E I K

Antigen Details
Antigen chainsA
Antigen typeprotein
Antigen namesecreted protein orf2
Antigen speciesHEPATITIS E VIRUS (STRAIN PAKISTAN)
Antigen sequenceMQLFYSRPVVSANGEPTVKLYTSVENAQQDKGIAIPHDIDLGESRVVIQDYDNQHEQDRPTPSPAPSRPFSVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSVTLVNVATGAQAVARSLDWTKVTLDGRPLSTIQQHSKTFFVLPLRGKLSFWEAGTTKAGYPYNYNTTASDQLLVENAAGHRVAISTYTTSLGAGPVSISAVAVLAPPPR

CDR Sequences (chothia definition)
CDRH1GFSLIGY
CDRH2WGDGS
CDRH3GVRPDPFDY
CDRL1KSSQSVLYSSNQKNYLA
CDRL2WASARES
CDRL3HQYLSSYT

Orientation Angles (from ABangle)
HL-58.73°
HC174.1°
HC2116.44°
LC1121.28°
LC283.85°
dc16.38Å
>   Downloads

Additional links and files for download: see help for more details.

Chothia-numbered structure Download
IMGT-numbered structure Download
Non-annotated structure from the PDB Download
Summary file for this antibody Download

Schneider, C., Raybould, M.I.J., Deane, C.M. (2022) SAbDab in the Age of Biotherapeutics: Updates including SAbDab-Nano, the Nanobody Structure Tracker. Nucleic Acids Res. 50(D1):D1368-D1372 [link]

SAbDab paper: Dunbar, J., Krawczyk, K. et al (2014). Nucleic Acids Res. 42. D1140-D1146 [link]

Thera-SAbDab paper: Raybould, M.I.J., Marks, C. et al (2019). Nucleic Acids Res. gkz827 [link]

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