Details for 3r8b

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Structure information

Crystal Structure of Staphylococcal Enterotoxin B in complex with an affinity Matured Mouse TCR Vbeta8.2 Protein, G5-8

Item	Info
PDB	3r8b
Organism	RATTUS NORVEGICUS
Method	X-RAY DIFFRACTION
Resolution	2.95Å
Number of TCRs	8

Paired chains information

This PDB has 8 TCR(s).

B / NA

TCR Details:

Item	Info
VB chain	B
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	K
B25	B26	B27	B28	B29	B36	B37	B38
Q	T	N	S	Y	F	N	N
B39	B40	B41	B42	B43	B44	B45	B46
M	Y	W	Y	R	Q	D	T
B47	B48	B49	B50	B51	B52	B53	B54
G	H	E	L	R	L	I	F
B55	B56	B57	B58	B63	B64	B65	B66
M	S	H	G	I	R	N	V
B67	B68	B69	B70	B71	B72	B74	B75
E	K	G	D	I	P	D	G
B76	B77	B78	B79	B80	B81	B83	B84
Y	K	A	S	R	P	S	Q
B85	B86	B87	B88	B89	B90	B91	B92
E	N	F	S	L	I	L	E
B93	B94	B95	B96	B97	B98	B99	B100
L	A	T	P	S	Q	T	S
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	F	C	A	S	G	G
B109	B114	B115	B116	B117	B118	B119	B120
G	G	T	L	Y	F	G	A
B121	B122	B123	B124	B125	B126	B127
G	T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SHGIRN	None	6
CDRB1	NSYFNN	None	6

D / NA

TCR Details:

Item	Info
VB chain	D
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	K
B25	B26	B27	B28	B29	B36	B37	B38
Q	T	N	S	Y	F	N	N
B39	B40	B41	B42	B43	B44	B45	B46
M	Y	W	Y	R	Q	D	T
B47	B48	B49	B50	B51	B52	B53	B54
G	H	E	L	R	L	I	F
B55	B56	B57	B58	B63	B64	B65	B66
M	S	H	G	I	R	N	V
B67	B68	B69	B70	B71	B72	B74	B75
E	K	G	D	I	P	D	G
B76	B77	B78	B79	B80	B81	B83	B84
Y	K	A	S	R	P	S	Q
B85	B86	B87	B88	B89	B90	B91	B92
E	N	F	S	L	I	L	E
B93	B94	B95	B96	B97	B98	B99	B100
L	A	T	P	S	Q	T	S
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	F	C	A	S	G	G
B109	B114	B115	B116	B117	B118	B119	B120
G	G	T	L	Y	F	G	A
B121	B122	B123	B124	B125	B126	B127
G	T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SHGIRN	None	6
CDRB1	NSYFNN	None	6

F / NA

TCR Details:

Item	Info
VB chain	F
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	K
B25	B26	B27	B28	B29	B36	B37	B38
Q	T	N	S	Y	F	N	N
B39	B40	B41	B42	B43	B44	B45	B46
M	Y	W	Y	R	Q	D	T
B47	B48	B49	B50	B51	B52	B53	B54
G	H	E	L	R	L	I	F
B55	B56	B57	B58	B63	B64	B65	B66
M	S	H	G	I	R	N	V
B67	B68	B69	B70	B71	B72	B74	B75
E	K	G	D	I	P	D	G
B76	B77	B78	B79	B80	B81	B83	B84
Y	K	A	S	R	P	S	Q
B85	B86	B87	B88	B89	B90	B91	B92
E	N	F	S	L	I	L	E
B93	B94	B95	B96	B97	B98	B99	B100
L	A	T	P	S	Q	T	S
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	F	C	A	S	G	G
B109	B114	B115	B116	B117	B118	B119	B120
G	G	T	L	Y	F	G	A
B121	B122	B123	B124	B125	B126	B127
G	T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SHGIRN	None	6
CDRB1	NSYFNN	None	6

H / NA

TCR Details:

Item	Info
VB chain	H
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	K
B25	B26	B27	B28	B29	B36	B37	B38
Q	T	N	S	Y	F	N	N
B39	B40	B41	B42	B43	B44	B45	B46
M	Y	W	Y	R	Q	D	T
B47	B48	B49	B50	B51	B52	B53	B54
G	H	E	L	R	L	I	F
B55	B56	B57	B58	B63	B64	B65	B66
M	S	H	G	I	R	N	V
B67	B68	B69	B70	B71	B72	B74	B75
E	K	G	D	I	P	D	G
B76	B77	B78	B79	B80	B81	B83	B84
Y	K	A	S	R	P	S	Q
B85	B86	B87	B88	B89	B90	B91	B92
E	N	F	S	L	I	L	E
B93	B94	B95	B96	B97	B98	B99	B100
L	A	T	P	S	Q	T	S
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	F	C	A	S	G	G
B109	B114	B115	B116	B117	B118	B119	B120
G	G	T	L	Y	F	G	A
B121	B122	B123	B124	B125	B126	B127
G	T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SHGIRN	None	6
CDRB1	NSYFNN	None	6

J / NA

TCR Details:

Item	Info
VB chain	J
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	K
B25	B26	B27	B28	B29	B36	B37	B38
Q	T	N	S	Y	F	N	N
B39	B40	B41	B42	B43	B44	B45	B46
M	Y	W	Y	R	Q	D	T
B47	B48	B49	B50	B51	B52	B53	B54
G	H	E	L	R	L	I	F
B55	B56	B57	B58	B63	B64	B65	B66
M	S	H	G	I	R	N	V
B67	B68	B69	B70	B71	B72	B74	B75
E	K	G	D	I	P	D	G
B76	B77	B78	B79	B80	B81	B83	B84
Y	K	A	S	R	P	S	Q
B85	B86	B87	B88	B89	B90	B91	B92
E	N	F	S	L	I	L	E
B93	B94	B95	B96	B97	B98	B99	B100
L	A	T	P	S	Q	T	S
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	F	C	A	S	G	G
B109	B114	B115	B116	B117	B118	B119	B120
G	G	T	L	Y	F	G	A
B121	B122	B123	B124	B125	B126	B127
G	T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SHGIRN	None	6
CDRB1	NSYFNN	None	6

L / NA

TCR Details:

Item	Info
VB chain	L
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	K
B25	B26	B27	B28	B29	B36	B37	B38
Q	T	N	S	Y	F	N	N
B39	B40	B41	B42	B43	B44	B45	B46
M	Y	W	Y	R	Q	D	T
B47	B48	B49	B50	B51	B52	B53	B54
G	H	E	L	R	L	I	F
B55	B56	B57	B58	B63	B64	B65	B66
M	S	H	G	I	R	N	V
B67	B68	B69	B70	B71	B72	B74	B75
E	K	G	D	I	P	D	G
B76	B77	B78	B79	B80	B81	B83	B84
Y	K	A	S	R	P	S	Q
B85	B86	B87	B88	B89	B90	B91	B92
E	N	F	S	L	I	L	E
B93	B94	B95	B96	B97	B98	B99	B100
L	A	T	P	S	Q	T	S
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	F	C	A	S	G	G
B109	B114	B115	B116	B117	B118	B119	B120
G	G	T	L	Y	F	G	A
B121	B122	B123	B124	B125	B126	B127
G	T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SHGIRN	None	6
CDRB1	NSYFNN	None	6

N / NA

TCR Details:

Item	Info
VB chain	N
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	K
B25	B26	B27	B28	B29	B36	B37	B38
Q	T	N	S	Y	F	N	N
B39	B40	B41	B42	B43	B44	B45	B46
M	Y	W	Y	R	Q	D	T
B47	B48	B49	B50	B51	B52	B53	B54
G	H	E	L	R	L	I	F
B55	B56	B57	B58	B63	B64	B65	B66
M	S	H	G	I	R	N	V
B67	B68	B69	B70	B71	B72	B74	B75
E	K	G	D	I	P	D	G
B76	B77	B78	B79	B80	B81	B83	B84
Y	K	A	S	R	P	S	Q
B85	B86	B87	B88	B89	B90	B91	B92
E	N	F	S	L	I	L	E
B93	B94	B95	B96	B97	B98	B99	B100
L	A	T	P	S	Q	T	S
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	F	C	A	S	G	G
B109	B114	B115	B116	B117	B118	B119	B120
G	G	T	L	Y	F	G	A
B121	B122	B123	B124	B125	B126	B127
G	T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SHGIRN	None	6
CDRB1	NSYFNN	None	6

P / NA

TCR Details:

Item	Info
VB chain	P
VB IMGT details	TRBV13/TRBJ2
Species	mouse

Numbered sequence

Chain type

Chain ID

FASTA/Annotation file

IMGT numbered sequence (Framework/CDR)

FASTA file

B1	B2	B3	B4	B5	B6	B7	B8
E	A	A	V	T	Q	S	P
B9	B10	B11	B12	B13	B14	B15	B16
R	N	K	V	A	V	T	G
B17	B18	B19	B20	B21	B22	B23	B24
E	K	V	T	L	S	C	K
B25	B26	B27	B28	B29	B36	B37	B38
Q	T	N	S	Y	F	N	N
B39	B40	B41	B42	B43	B44	B45	B46
M	Y	W	Y	R	Q	D	T
B47	B48	B49	B50	B51	B52	B53	B54
G	H	E	L	R	L	I	F
B55	B56	B57	B58	B63	B64	B65	B66
M	S	H	G	I	R	N	V
B67	B68	B69	B70	B71	B72	B74	B75
E	K	G	D	I	P	D	G
B76	B77	B78	B79	B80	B81	B83	B84
Y	K	A	S	R	P	S	Q
B85	B86	B87	B88	B89	B90	B91	B92
E	N	F	S	L	I	L	E
B93	B94	B95	B96	B97	B98	B99	B100
L	A	T	P	S	Q	T	S
B101	B102	B103	B104	B105	B106	B107	B108
V	Y	F	C	A	S	G	G
B109	B114	B115	B116	B117	B118	B119	B120
G	G	T	L	Y	F	G	A
B121	B122	B123	B124	B125	B126	B127
G	T	R	L	S	V	L

CDR Sequences:

Loop	Sequence	Predicted canonical form	CDR Length
CDRB3	ASGGGGTLY	None	9
CDRB2	SHGIRN	None	6
CDRB1	NSYFNN	None	6

Available downloads

Additional links and files for download: see help for more details.

Item	Link
IMGT-numbered structure	Link
Non-annotated structure from the PDB	Link
Summary file for this TCR	Link
Link in the PDB	Link